open-discussion > Why my paratospharmmesh folder is empty?
Feb 5, 2019  04:02 AM | natsunami
Why my paratospharmmesh folder is empty?
Hi everyone !

I would like to understand why my 'paratospharmmesh'  folder is empty after completing the shape analysis module ( I only have files into 'SegPostProcess' and 'GenParaMesh'. Indeed, at the end of the pipeline, when the module stop running, it says that "ParaToSPHARMMesh completed with errors" at step 2:

Widget: Running ShapeAnalysisModule
-- Scheduled : ShapeAnalysisModule
2 case(s) found
-- Running : ShapeAnalysisModule
-- Scheduled: Case 0: sub01_eb110475_meanhippoleft.nii_rsfmrires.nii.gz_binarized.nii.gz
-- Scheduled : Case 0: sub01_eb110475_meanhippoleft - step 0: SegPostProcess
-- Running : Case 0: sub01_eb110475_meanhippoleft - step 0: SegPostProcess
-- Completed : Case 0: sub01_eb110475_meanhippoleft - step 0: SegPostProcess
-- Scheduled : Case 0: sub01_eb110475_meanhippoleft - step 1: GenParaMesh
-- Running : Case 0: sub01_eb110475_meanhippoleft - step 1: GenParaMesh
-- Completing : Case 0: sub01_eb110475_meanhippoleft - step 1: GenParaMesh
-- Completed : Case 0: sub01_eb110475_meanhippoleft - step 1: GenParaMesh
-- Scheduled : Case 0: sub01_eb110475_meanhippoleft - step 2: ParaToSPHARMMesh
-- Running : Case 0: sub01_eb110475_meanhippoleft - step 2: ParaToSPHARMMesh
-- Completed with errors : Case 0: sub01_eb110475_meanhippoleft - step 2: ParaToSPHARMMesh
Saving sub01_eb110475_meanhippoleft_pp.nrrd in C:/Users/Damien/Downloads/SPHARM_Tutorial_Data_July2015/Hippo tests/outputdata/Step1_SegPostProcess
Saving sub01_eb110475_meanhippoleft_pp_para.vtk in C:/Users/Damien/Downloads/SPHARM_Tutorial_Data_July2015/Hippo tests/outputdata/Step2_GenParaMesh
Saving sub01_eb110475_meanhippoleft_pp_surf.vtk in C:/Users/Damien/Downloads/SPHARM_Tutorial_Data_July2015/Hippo tests/outputdata/Step2_GenParaMesh
-- Completed with errors: Case 0: sub01_eb110475_meanhippoleft.nii_rsfmrires.nii.gz_binarized.nii.gz
Case 0 (sub01_eb110475_meanhippoleft.nii_rsfmrires.nii.gz_binarized.nii.gz) took 9 sec to run
Case 0: sub01_eb110475_meanhippoleft - step 2: ParaToSPHARMMesh completed with errors
-- Scheduled: Case 1: sub01_eb110475_meanhipporight.nii
-- Scheduled : Case 1: sub01_eb110475_meanhipporight - step 0: SegPostProcess
-- Running : Case 1: sub01_eb110475_meanhipporight - step 0: SegPostProcess
-- Completed : Case 1: sub01_eb110475_meanhipporight - step 0: SegPostProcess
-- Scheduled : Case 1: sub01_eb110475_meanhipporight - step 1: GenParaMesh
-- Running : Case 1: sub01_eb110475_meanhipporight - step 1: GenParaMesh
-- Completing : Case 1: sub01_eb110475_meanhipporight - step 1: GenParaMesh
-- Completed : Case 1: sub01_eb110475_meanhipporight - step 1: GenParaMesh
-- Scheduled : Case 1: sub01_eb110475_meanhipporight - step 2: ParaToSPHARMMesh
-- Running : Case 1: sub01_eb110475_meanhipporight - step 2: ParaToSPHARMMesh
-- Completed with errors : Case 1: sub01_eb110475_meanhipporight - step 2: ParaToSPHARMMesh
Saving sub01_eb110475_meanhipporight_pp.nrrd in C:/Users/Damien/Downloads/SPHARM_Tutorial_Data_July2015/Hippo tests/outputdata/Step1_SegPostProcess
Saving sub01_eb110475_meanhipporight_pp_para.vtk in C:/Users/Damien/Downloads/SPHARM_Tutorial_Data_July2015/Hippo tests/outputdata/Step2_GenParaMesh
Saving sub01_eb110475_meanhipporight_pp_surf.vtk in C:/Users/Damien/Downloads/SPHARM_Tutorial_Data_July2015/Hippo tests/outputdata/Step2_GenParaMesh
-- Completed with errors: Case 1: sub01_eb110475_meanhipporight.nii
Case 1 (sub01_eb110475_meanhipporight.nii) took 91 sec to run
Case 1: sub01_eb110475_meanhipporight - step 2: ParaToSPHARMMesh completed with errors
All pipelines took: 103 sec to run
-- Completed with errors : ShapeAnalysisModule
Case 1: sub01_eb110475_meanhipporight - step 2: ParaToSPHARMMesh completed with errors

You will find attached to this message a log messages .txt,

Regards,
Damien
Attachment: error .txt

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TitleAuthorDate
Why my paratospharmmesh folder is empty?
natsunami Feb 5, 2019
Beatriz Paniagua Feb 5, 2019