slicemoco_newalgorithm.sh -d $sub176_176tr -s 2

But at the end I get this not very reassuring message (see my bolding below) which suggests slomoco has run with slice timing set to interleaved.
My question is, did I specify the flag incorrectly? Is there some way for me to verify that it used sequential slice timing?  Please let me know how I should proceeed.

Thankyou,

Dianne Patterson, Ph.D.
Research Scientist
dkp@email.arizona.edu
University of Arizona
Speech and Hearing Science 

=============================================

Running Secondorder Motion Correction using SLOMOCO output
matlab <<<"addpath /MATLAB/slomoco_afni_07_2014; mocoparams=read_motion_newslicealg('tempslmoco_volslc_alg_vol_run1_sub176_176tr.slicemocoxy_afni/motion.wholevol_zt'); slicemoco_newalgorithm_input('run1_sub176_176tr.slicemocoxy_afni+orig','run1_sub176_176tr.brain+orig',mocoparams,2); exit;"
< M A T L A B (R) >
Copyright 1984-2014 The MathWorks, Inc.
R2014a (8.3.0.532) 64-bit (maci64)
February 11, 2014
To get started, type one of these: helpwin, helpdesk, or demo.
For product information, visit http://www.mathworks.com.
>>
tdim =
176
zdim =
36
assuming slice timing==1, for interleaved ascending, siemens style
Wait, script starting...
Elapsed time is 246.858306 seconds.
ErrMessage =
''
InfoOut =
RootName: 'run1_sub176_176tr.slicemocoxy_afni+orig'
DATASET_RANK: [3 176 0 0 0 0 0 0]
BRICK_TYPES: [1x176 double]
BYTEORDER_STRING: 'LSB_FIRST'
ORIENT_SPECIFIC: [0 2 4]
ORIGIN: [-98.3183 135.9666 -33.1909]
DELTA: [3.3611 -3.3611 3.9999]
SCENE_DATA: [0 2 0 -999 -999 -999 -999 -999]
TYPESTRING: '3DIM_HEAD_ANAT'
TAXIS_NUMS: [176 0 77002 -999 -999 -999 -999 -999]
TAXIS_FLOATS: [0 2 0 0 0 -999999 -999999 -999999]
IDCODE_DATE: 'Tue Dec 16 12:22:31 2014'
HISTORY_NOTE: '[dpat@caribou.shs.arizona.edu: Tue Dec 16 12:04:3...'
IJK_TO_DICOM_REAL: [1x12 double]
LABEL_1: 'zyxt'
LABEL_2: 'zyxt'
DATASET_NAME: 'zyxt'
WORSLEY_DF: []
WORSLEY_NCONJ: []
WORSLEY_FWHM: []
TypeName: 'short'
TypeBytes: 2
ByteOrder: 'ieee-le'
Orientation: [3x2 char]
FileFormat: 'BRIK'
Extension_1D: ''
DATASET_DIMENSIONS: [60 72 36 0 0]
BRICK_FLOAT_FACS: [1x176 double]
BRICK_STATS: [1x352 double]
err =
0
2nd order Moco Done!
< M A T L A B (R) >
Copyright 1984-2014 The MathWorks, Inc.
R2014a (8.3.0.532) 64-bit (maci64)
February 11, 2014
To get started, type one of these: helpwin, helpdesk, or demo.
For product information, visit http://www.mathworks.com.
>> using 36 slices, TR=2.000000 seconds
tdim =
176
zdim =
36
tdim =
176
zdim =
36
QA script currently assumes we acquire interleaved asc, odds, then evens
*+ WARNING: If you are performing spatial transformations on an oblique dset,
such as run1_sub176_176tr_pestica/run1_sub176_176tr+orig.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:run1_sub176_176tr_pestica/run1_sub176_176tr+orig.BRIK is 7.057969 degrees from plumb.
*+ WARNING: If you are performing spatial transformations on an oblique dset,
such as run1_sub176_176tr_pestica/run1_sub176_176tr+orig.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:run1_sub176_176tr_pestica/run1_sub176_176tr+orig.BRIK is 7.057969 degrees from plumb.
*+ WARNING: If you are performing spatial transformations on an oblique dset,
such as run1_sub176_176tr_pestica/run1_sub176_176tr+orig.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:run1_sub176_176tr_pestica/run1_sub176_176tr+orig.BRIK is 7.057969 degrees from plumb.
++ 3drefit: AFNI version=AFNI_2011_12_21_1014 (Jul 3 2014) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset run1_sub176_176tr.slicemocoxy_afni.zalg_moco2+orig
++ applying attributes
++ 3drefit processed 1 datasets
++ 3drefit: AFNI version=AFNI_2011_12_21_1014 (Jul 3 2014) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset run1_sub176_176tr.slicemocoxy_afni.zalg_moco2+orig
++ applying attributes
++ 3drefit processed 1 datasets
++ 3drefit: AFNI version=AFNI_2011_12_21_1014 (Jul 3 2014) [64-bit]
++ Authored by: RW Cox
** ERROR: Can't decode 1D: string
** FATAL ERROR: No options given!?
Error reading floating point attribute file** Program compile date = Jul 3 2014