Welcome to the collection of documents for AutoSeg.

Adding Documents: Members of AutoSeg may submit documents to the folders below; however, an administrator will decide whether or not to publish a document.

Deleting Documents: If you find an out-dated document, please send a request to the tool/resource administrator.

Add New Document
Show documents in: 
Folders/DocumentsAdd
AutoSeg_2.0
Description: documentation of AutoSeg_2.0
Updated: Apr 19, 2011
AutoSeg_2.1
Description: Description of AutoSeg_2.1
Updated: Jun 17, 2011
Sample Computation and Parameters files
Description: Sample Computation and Parameters files for AutoSeg. These files can be used as input of the tool.
Updated: Dec 29, 2013
Sample Segmentation Results
Description: Segmentation results (label files) of a testing data set from MICCAI 2012 Multi-Label Segmentation Grand Challenge
Updated: Oct 31, 2013
Tutorial on using AutoSeg 3.3.2 for macaque brain segmentation
Updated: Oct 12, 2017
PubMed Mentions ( 14 )+
The capsid proteins of a large, icosahedral dsDNA virus.
Description: Yan, Xiaodong, et al. The capsid proteins of a large, icosahedral dsDNA virus. ''J Mol Biol''. 2009 Jan 30; '''385''' (4):1287-99
Updated: Sep 21, 2019
Synergy of image analysis for animal and human neuroimaging supports translational research on drug abuse.
Description: Gerig, Guido, et al. Synergy of image analysis for animal and human neuroimaging supports translational research on drug abuse. ''Front Psychiatry''. 2011; '''2''': 53
Updated: Sep 21, 2019
UNC-Utah NA-MIC framework for DTI fiber tract analysis.
Description: Verde, Audrey R, et al. UNC-Utah NA-MIC framework for DTI fiber tract analysis. ''Front Neuroinform''. 2014; '''7''': 51
Updated: Sep 21, 2019
UNC-Emory Infant Atlases for Macaque Brain Image Analysis: Postnatal Brain Development through 12 Months.
Description: Shi, Yundi, et al. UNC-Emory Infant Atlases for Macaque Brain Image Analysis: Postnatal Brain Development through 12 Months. ''Front Neurosci''. 2016; '''10''': 617
Updated: Sep 21, 2019
Automatic segmentation of the striatum and globus pallidus using MIST: Multimodal Image Segmentation Tool.
Description: Visser, Eelke, et al. Automatic segmentation of the striatum and globus pallidus using MIST: Multimodal Image Segmentation Tool. ''Neuroimage''. 2016 Jan 15; '''125''': 479-497
Updated: Sep 21, 2019
Folded concave penalized learning in identifying multimodal MRI marker for Parkinson's disease.
Description: Liu, Hongcheng, et al. Folded concave penalized learning in identifying multimodal MRI marker for Parkinson's disease. ''J Neurosci Methods''. 2016 Aug 1; '''268''': 1-6
Updated: Sep 21, 2019
Early brain development in infants at high risk for autism spectrum disorder.
Description: Hazlett, Heather Cody, et al. Early brain development in infants at high risk for autism spectrum disorder. ''Nature''. 2017 Feb 15; '''542''' (7641):348-351
Updated: Sep 21, 2019
Multimodal MRI evaluation of parkinsonian limbic pathologies.
Description: Wang, Ernest W, et al. Multimodal MRI evaluation of parkinsonian limbic pathologies. ''Neurobiol Aging''. 2019 Apr; '''76''': 194-200
Updated: Sep 21, 2019
Anomalies in uncinate fasciculus development and social defects in preschoolers with autism spectrum disorder.
Description: Li, Yun, et al. Anomalies in uncinate fasciculus development and social defects in preschoolers with autism spectrum disorder. ''BMC Psychiatry''. 2019 Dec 16; '''19''' (1):399
Updated: Jan 11, 2020
A Novel Method for High-Dimensional Anatomical Mapping of Extra-Axial Cerebrospinal Fluid: Application to the Infant Brain.
Description: Mostapha, Mahmoud, et al. A Novel Method for High-Dimensional Anatomical Mapping of Extra-Axial Cerebrospinal Fluid: Application to the Infant Brain. ''Front Neurosci''. 2020; '''14''': 561556
Updated: Nov 14, 2020
Quantitative definition of neurobehavior, vision, hearing and brain volumes in macaques congenitally exposed to Zika virus.
Description: Koenig, Michelle R, et al. Quantitative definition of neurobehavior, vision, hearing and brain volumes in macaques congenitally exposed to Zika virus. ''PLoS One''. 2020; '''15''' (10):e0235877
Updated: Nov 14, 2020
A Simple Method for Automatic 3D Reconstruction of Coronary Arteries From X-Ray Angiography.
Description: Hwang, Minki, et al. A Simple Method for Automatic 3D Reconstruction of Coronary Arteries From X-Ray Angiography. ''Front Physiol''. 2021; '''12''': 724216
Updated: Oct 16, 2021
Structural development of cortical lobes during the first 6 months of life in infant macaques.
Description: Kovacs-Balint, Z A, et al. Structural development of cortical lobes during the first 6 months of life in infant macaques. ''Dev Cogn Neurosci''. 2021 Jan 8; '''48''': 100906
Updated: Feb 13, 2021
Infant gut microbiome composition is associated with non-social fear behavior in a pilot study.
Description: Carlson, Alexander L, et al. Infant gut microbiome composition is associated with non-social fear behavior in a pilot study. ''Nat Commun''. 2021 Jun 2; '''12''' (1):3294
Updated: Oct 16, 2021