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AutoSeg_2.0
Description: documentation of AutoSeg_2.0
Updated: Apr 19, 2011
AutoSeg_2.1
Description: Description of AutoSeg_2.1
Updated: Jun 17, 2011
Sample Computation and Parameters files
Description: Sample Computation and Parameters files for AutoSeg. These files can be used as input of the tool.
Updated: Dec 28, 2013
Sample Segmentation Results
Description: Segmentation results (label files) of a testing data set from MICCAI 2012 Multi-Label Segmentation Grand Challenge
Updated: Oct 31, 2013
Tutorial on using AutoSeg 3.3.2 for macaque brain segmentation
Updated: Oct 12, 2017
PubMed Mentions ( 29 )+
Developmental implications of nonlinear phonological theory.
Description: Bernhardt, B. Developmental implications of nonlinear phonological theory. ''Clin Linguist Phon''. 1992; '''6''' (4):259-81
Updated: Dec 16, 2017
Optimization of long-distance PCR using a transposon-based model system.
Description: Ohler, L D, et al. Optimization of long-distance PCR using a transposon-based model system. ''PCR Methods Appl''. 1992 Aug; '''2''' (1):51-9
Updated: Dec 16, 2017
[An automatic color correction algorithm for digital human body sections].
Description: Zhuge, Bin, et al. [An automatic color correction algorithm for digital human body sections]. ''Space Med Med Eng (Beijing)''. 2005 Jun; '''18''' (3):211-5
Updated: Dec 16, 2017
The capsid proteins of a large, icosahedral dsDNA virus.
Description: Yan, Xiaodong, et al. The capsid proteins of a large, icosahedral dsDNA virus. ''J Mol Biol''. 2009 Jan 30; '''385''' (4):1287-99
Updated: Sep 21, 2019
A qualitative and a quantitative analysis of an auto-segmentation module for prostate cancer.
Description: Huyskens, Dominique P, et al. A qualitative and a quantitative analysis of an auto-segmentation module for prostate cancer. ''Radiother Oncol''. 2009 Mar; '''90''' (3):337-45
Updated: Dec 16, 2017
Automatic segmentation of whole breast using atlas approach and deformable image registration.
Description: Reed, Valerie K, et al. Automatic segmentation of whole breast using atlas approach and deformable image registration. ''Int J Radiat Oncol Biol Phys''. 2009 Apr 1; '''73''' (5):1493-500
Updated: Dec 16, 2017
Reconstruction of brachytherapy seed positions and orientations from cone-beam CT x-ray projections via a novel iterative forward projection matching method.
Description: Pokhrel, Damodar, et al. Reconstruction of brachytherapy seed positions and orientations from cone-beam CT x-ray projections via a novel iterative forward projection matching method. ''Med Phys''. 2011 Jan; '''38''' (1):474-86
Updated: Dec 16, 2017
Synergy of image analysis for animal and human neuroimaging supports translational research on drug abuse.
Description: Gerig, Guido, et al. Synergy of image analysis for animal and human neuroimaging supports translational research on drug abuse. ''Front Psychiatry''. 2011; '''2''': 53
Updated: Sep 21, 2019
Localizing intracavitary brachytherapy applicators from cone-beam CT x-ray projections via a novel iterative forward projection matching algorithm.
Description: Pokhrel, Damodar, et al. Localizing intracavitary brachytherapy applicators from cone-beam CT x-ray projections via a novel iterative forward projection matching algorithm. ''Med Phys''. 2011 Feb; '''38''' (2):1070-80
Updated: Dec 16, 2017
Auto-segmentation of normal and target structures in head and neck CT images: a feature-driven model-based approach.
Description: Qazi, Arish A, et al. Auto-segmentation of normal and target structures in head and neck CT images: a feature-driven model-based approach. ''Med Phys''. 2011 Nov; '''38''' (11):6160-70
Updated: Dec 16, 2017
Clinical validation of atlas-based auto-segmentation of multiple target volumes and normal tissue (swallowing/mastication) structures in the head and neck.
Description: Teguh, David N, et al. Clinical validation of atlas-based auto-segmentation of multiple target volumes and normal tissue (swallowing/mastication) structures in the head and neck. ''Int J Radiat Oncol Biol Phys''. 2011 Nov 15; '''81''' (4):950-7
Updated: Dec 16, 2017
Serum cholesterol and nigrostriatal R2* values in Parkinson's disease.
Description: Du, Guangwei, et al. Serum cholesterol and nigrostriatal R2* values in Parkinson's disease. ''PLoS One''. 2012; '''7''' (4):e35397
Updated: Dec 16, 2017
A multiphase validation of atlas-based automatic and semiautomatic segmentation strategies for prostate MRI.
Description: Martin, Spencer, et al. A multiphase validation of atlas-based automatic and semiautomatic segmentation strategies for prostate MRI. ''Int J Radiat Oncol Biol Phys''. 2013 Jan 1; '''85''' (1):95-100
Updated: Dec 16, 2017
Automated segmentation tool for brain infusions.
Description: Rosenbluth, Kathryn Hammond, et al. Automated segmentation tool for brain infusions. ''PLoS One''. 2013; '''8''' (6):e64452
Updated: Dec 16, 2017
Segmentation of brain MRI using SOM-FCM-based method and 3D statistical descriptors.
Description: Ortiz, Andres, et al. Segmentation of brain MRI using SOM-FCM-based method and 3D statistical descriptors. ''Comput Math Methods Med''. 2013; '''2013''': 638563
Updated: Dec 16, 2017
Statistical Learning Algorithm for in situ and invasive breast carcinoma segmentation.
Description: Jayender, Jagadeesan, et al. Statistical Learning Algorithm for in situ and invasive breast carcinoma segmentation. ''Comput Med Imaging Graph''. 2013 Jun; '''37''' (4):281-92
Updated: Dec 16, 2017
A virtual phantom library for the quantification of deformable image registration uncertainties in patients with cancers of the head and neck.
Description: Pukala, Jason, et al. A virtual phantom library for the quantification of deformable image registration uncertainties in patients with cancers of the head and neck. ''Med Phys''. 2013 Nov; '''40''' (11):111703
Updated: Dec 16, 2017
Combined PET/CT for IMRT treatment planning of NSCLC: contrast-enhanced CT images for Monte Carlo dose calculation.
Description: Monnich, David, et al. Combined PET/CT for IMRT treatment planning of NSCLC: contrast-enhanced CT images for Monte Carlo dose calculation. ''Phys Med''. 2013 Nov; '''29''' (6):644-9
Updated: Dec 16, 2017
Multi-institutional quantitative evaluation and clinical validation of Smart Probabilistic Image Contouring Engine (SPICE) autosegmentation of target structures and normal tissues on computer tomography images in the head and neck, thorax, liver, and ...
Description: Zhu, Mingyao, et al. Multi-institutional quantitative evaluation and clinical validation of Smart Probabilistic Image Contouring Engine (SPICE) autosegmentation of target structures and normal tissues on computer tomography images in the head and neck, thorax, liver, and male pelvis areas. ''Int J Radiat Oncol Biol Phys''. 2013 Nov 15; '''87''' (4):809-16
Updated: Dec 16, 2017
Inter-slice bidirectional registration-based segmentation of the prostate gland in MR and CT image sequences.
Description: Khalvati, Farzad, et al. Inter-slice bidirectional registration-based segmentation of the prostate gland in MR and CT image sequences. ''Med Phys''. 2013 Dec; '''40''' (12):123503
Updated: Dec 16, 2017
Multi-atlas segmentation of subcortical brain structures via the AutoSeg software pipeline.
Description: Wang, Jiahui, et al. Multi-atlas segmentation of subcortical brain structures via the AutoSeg software pipeline. ''Front Neuroinform''. 2014; '''8''': 7
Updated: Dec 16, 2017
UNC-Utah NA-MIC framework for DTI fiber tract analysis.
Description: Verde, Audrey R, et al. UNC-Utah NA-MIC framework for DTI fiber tract analysis. ''Front Neuroinform''. 2014; '''7''': 51
Updated: Sep 21, 2019
Defining internal target volume using positron emission tomography for radiation therapy planning of moving lung tumors.
Description: Riegel, Adam C, et al. Defining internal target volume using positron emission tomography for radiation therapy planning of moving lung tumors. ''J Appl Clin Med Phys''. 2014 Jan 6; '''15''' (1):4600
Updated: Dec 16, 2017
UNC-Emory Infant Atlases for Macaque Brain Image Analysis: Postnatal Brain Development through 12 Months.
Description: Shi, Yundi, et al. UNC-Emory Infant Atlases for Macaque Brain Image Analysis: Postnatal Brain Development through 12 Months. ''Front Neurosci''. 2016; '''10''': 617
Updated: Sep 21, 2019
Automatic segmentation of the striatum and globus pallidus using MIST: Multimodal Image Segmentation Tool.
Description: Visser, Eelke, et al. Automatic segmentation of the striatum and globus pallidus using MIST: Multimodal Image Segmentation Tool. ''Neuroimage''. 2016 Jan 15; '''125''': 479-497
Updated: Sep 21, 2019
Folded concave penalized learning in identifying multimodal MRI marker for Parkinson's disease.
Description: Liu, Hongcheng, et al. Folded concave penalized learning in identifying multimodal MRI marker for Parkinson's disease. ''J Neurosci Methods''. 2016 Aug 1; '''268''': 1-6
Updated: Sep 21, 2019
Early brain development in infants at high risk for autism spectrum disorder.
Description: Hazlett, Heather Cody, et al. Early brain development in infants at high risk for autism spectrum disorder. ''Nature''. 2017 Feb 15; '''542''' (7641):348-351
Updated: Sep 21, 2019
Multimodal MRI evaluation of parkinsonian limbic pathologies.
Description: Wang, Ernest W, et al. Multimodal MRI evaluation of parkinsonian limbic pathologies. ''Neurobiol Aging''. 2019 Apr; '''76''': 194-200
Updated: Sep 21, 2019
Anomalies in uncinate fasciculus development and social defects in preschoolers with autism spectrum disorder.
Description: Li, Yun, et al. Anomalies in uncinate fasciculus development and social defects in preschoolers with autism spectrum disorder. ''BMC Psychiatry''. 2019 Dec 16; '''19''' (1):399
Updated: Jan 11, 2020