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CALM Developers Manual
Description: Clinical Assessment Layout Manager Developers Guide
Updated: Jan 26, 2012
CALM User Manual
Description: Clinical Assessment Layout Manager User Manual
Updated: Jan 26, 2012
HID Developer Manual
Description: A developer manual to the HID GUI
Updated: Jan 26, 2012
HID User Manual
Description: An End-User manual to the HID GUI
Updated: Jan 26, 2012
HID Walkthroughs
Description: Samples Walkthroughs for the HID GUI
PubMed Mentions ( 55 )+
The cell-centered database: a database for multiscale structural and protein localization data from light and electron microscopy.
Description: Martone, Maryann E, et al. The cell-centered database: a database for multiscale structural and protein localization data from light and electron microscopy. ''Neuroinformatics''. 2003; '''1''' (4):379-95
Updated: Dec 16, 2017
E-neuroscience: challenges and triumphs in integrating distributed data from molecules to brains.
Description: Martone, Maryann E, et al. E-neuroscience: challenges and triumphs in integrating distributed data from molecules to brains. ''Nat Neurosci''. 2004 May; '''7''' (5):467-72
Updated: Dec 16, 2017
Sharing neuroimaging studies of human cognition.
Description: Van Horn, John Darrell, et al. Sharing neuroimaging studies of human cognition. ''Nat Neurosci''. 2004 May; '''7''' (5):473-81
Updated: Dec 16, 2017
Tools for knowledge acquisition within the NeuroScholar system and their application to anatomical tract-tracing data.
Description: Burns, Gully A P C, et al. Tools for knowledge acquisition within the NeuroScholar system and their application to anatomical tract-tracing data. ''J Biomed Discov Collab''. 2006 Aug 8; '''1''': 10
Updated: Dec 16, 2017
The NeuARt II system: a viewing tool for neuroanatomical data based on published neuroanatomical atlases.
Description: Burns, Gully A P C, et al. The NeuARt II system: a viewing tool for neuroanatomical data based on published neuroanatomical atlases. ''BMC Bioinformatics''. 2006 Dec 13; '''7''': 531
Updated: Dec 16, 2017
Federated access to heterogeneous information resources in the Neuroscience Information Framework (NIF).
Description: Gupta, Amarnath, et al. Federated access to heterogeneous information resources in the Neuroscience Information Framework (NIF). ''Neuroinformatics''. 2008 Sep; '''6''' (3):205-17
Updated: Dec 16, 2017
Terminology for neuroscience data discovery: multi-tree syntax and investigator-derived semantics.
Description: Gardner, Daniel, et al. Terminology for neuroscience data discovery: multi-tree syntax and investigator-derived semantics. ''Neuroinformatics''. 2008 Sep; '''6''' (3):161-74
Updated: Dec 16, 2017
The neuroscience information framework: a data and knowledge environment for neuroscience.
Description: Gardner, Daniel, et al. The neuroscience information framework: a data and knowledge environment for neuroscience. ''Neuroinformatics''. 2008 Sep; '''6''' (3):149-60
Updated: Dec 16, 2017
The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience.
Description: Bug, William J, et al. The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience. ''Neuroinformatics''. 2008 Sep; '''6''' (3):175-94
Updated: Dec 16, 2017
Standardizing data.
Description: Standardizing data. ''Nat Cell Biol''. 2008 Oct; '''10''' (10):1123-4
Updated: Dec 16, 2017
Derived Data Storage and Exchange Workflow for Large-Scale Neuroimaging Analyses on the BIRN Grid.
Description: Keator, David B, et al. Derived Data Storage and Exchange Workflow for Large-Scale Neuroimaging Analyses on the BIRN Grid. ''Front Neuroinform''. 2009; '''3''': 30
Updated: Sep 21, 2019
Interactive exploration of neuroanatomical meta-spaces.
Description: Joshi, Shantanu H, et al. Interactive exploration of neuroanatomical meta-spaces. ''Front Neuroinform''. 2009; '''3''': 38
Updated: Dec 16, 2017
Security and privacy requirements for a multi-institutional cancer research data grid: an interview-based study.
Description: Manion, Frank J, et al. Security and privacy requirements for a multi-institutional cancer research data grid: an interview-based study. ''BMC Med Inform Decis Mak''. 2009 Jun 15; '''9''': 31
Updated: Dec 16, 2017
A case for using grid architecture for state public health informatics: the Utah perspective.
Description: Staes, Catherine J, et al. A case for using grid architecture for state public health informatics: the Utah perspective. ''BMC Med Inform Decis Mak''. 2009 Jun 22; '''9''': 32
Updated: Dec 16, 2017
Application of neuroanatomical ontologies for neuroimaging data annotation.
Description: Turner, Jessica A, et al. Application of neuroanatomical ontologies for neuroimaging data annotation. ''Front Neuroinform''. 2010; '''4''':
Updated: Dec 16, 2017
Neuroscience Data Integration through Mediation: An (F)BIRN Case Study.
Description: Ashish, Naveen, et al. Neuroscience Data Integration through Mediation: An (F)BIRN Case Study. ''Front Neuroinform''. 2010; '''4''': 118
Updated: Dec 16, 2017
Biomedical informatics and translational medicine.
Description: Sarkar, Indra Neil. Biomedical informatics and translational medicine. ''J Transl Med''. 2010 Feb 26; '''8''': 22
Updated: Dec 16, 2017
Visualization of image data from cells to organisms.
Description: Walter, Thomas, et al. Visualization of image data from cells to organisms. ''Nat Methods''. 2010 Mar; '''7''' (3 Suppl):S26-41
Updated: Dec 16, 2017
Opportunities and challenges for digital morphology.
Description: Ziegler, Alexander, et al. Opportunities and challenges for digital morphology. ''Biol Direct''. 2010 Jul 6; '''5''': 45
Updated: Dec 16, 2017
An open source toolkit for medical imaging de-identification.
Description: Gonzalez, David Rodriguez, et al. An open source toolkit for medical imaging de-identification. ''Eur Radiol''. 2010 Aug; '''20''' (8):1896-904
Updated: Dec 16, 2017
DFBIdb: a software package for neuroimaging data management.
Description: Adamson, Christopher L, et al. DFBIdb: a software package for neuroimaging data management. ''Neuroinformatics''. 2010 Dec; '''8''' (4):273-84
Updated: Dec 16, 2017
Federated web-accessible clinical data management within an extensible neuroimaging database.
Description: Ozyurt, I Burak, et al. Federated web-accessible clinical data management within an extensible neuroimaging database. ''Neuroinformatics''. 2010 Dec; '''8''' (4):231-49
Updated: Dec 16, 2017
Integrating clinical trial imaging data resources using service-oriented architecture and grid computing.
Description: El-Ghatta, Stefan Baumann, et al. Integrating clinical trial imaging data resources using service-oriented architecture and grid computing. ''Neuroinformatics''. 2010 Dec; '''8''' (4):251-9
Updated: Dec 16, 2017
The clinical assessment and remote administration tablet.
Description: Turner, Jessica A, et al. The clinical assessment and remote administration tablet. ''Front Neuroinform''. 2011; '''5''': 31
Updated: Dec 16, 2017
Automated generation of massive image knowledge collections using Microsoft Live Labs Pivot to promote neuroimaging and translational research.
Description: Viangteeravat, Teeradache, et al. Automated generation of massive image knowledge collections using Microsoft Live Labs Pivot to promote neuroimaging and translational research. ''J Clin Bioinforma''. 2011 Jul 15; '''1''' (1):18
Updated: Dec 16, 2017
The BrainMap strategy for standardization, sharing, and meta-analysis of neuroimaging data.
Description: Laird, Angela R, et al. The BrainMap strategy for standardization, sharing, and meta-analysis of neuroimaging data. ''BMC Res Notes''. 2011 Sep 9; '''4''': 349
Updated: Dec 16, 2017
Ubiquitous healthcare computing with SEnsor Grid Enhancement with Data Management System (SEGEDMA).
Description: Preve, Nikolaos. Ubiquitous healthcare computing with SEnsor Grid Enhancement with Data Management System (SEGEDMA). ''J Med Syst''. 2011 Dec; '''35''' (6):1375-92
Updated: Dec 16, 2017
Genome-wide copy number variation study associates metabotropic glutamate receptor gene networks with attention deficit hyperactivity disorder.
Description: Elia, Josephine, et al. Genome-wide copy number variation study associates metabotropic glutamate receptor gene networks with attention deficit hyperactivity disorder. ''Nat Genet''. 2011 Dec 4; '''44''' (1):78-84
Updated: Dec 16, 2017
Data sharing in neuroimaging research.
Description: Poline, Jean-Baptiste, et al. Data sharing in neuroimaging research. ''Front Neuroinform''. 2012; '''6''': 9
Updated: Sep 21, 2019
Preserved self-awareness following extensive bilateral brain damage to the insula, anterior cingulate, and medial prefrontal cortices.
Description: Philippi, Carissa L, et al. Preserved self-awareness following extensive bilateral brain damage to the insula, anterior cingulate, and medial prefrontal cortices. ''PLoS One''. 2012; '''7''' (8):e38413
Updated: Dec 16, 2017
PyXNAT: XNAT in Python.
Description: Schwartz, Yannick, et al. PyXNAT: XNAT in Python. ''Front Neuroinform''. 2012; '''6''': 12
Updated: Dec 16, 2017
Systems biology of kidney diseases.
Description: He, John Cijiang, et al. Systems biology of kidney diseases. ''Kidney Int''. 2012 Jan; '''81''' (1):22-39
Updated: Dec 16, 2017
The cognitive paradigm ontology: design and application.
Description: Turner, Jessica A, et al. The cognitive paradigm ontology: design and application. ''Neuroinformatics''. 2012 Jan; '''10''' (1):57-66
Updated: Dec 16, 2017
XCEDE: an extensible schema for biomedical data.
Description: Gadde, Syam, et al. XCEDE: an extensible schema for biomedical data. ''Neuroinformatics''. 2012 Jan; '''10''' (1):19-32
Updated: Dec 16, 2017
Research and technology in neurocritical care.
Description: Wijman, C A C, et al. Research and technology in neurocritical care. ''Neurocrit Care''. 2012 Feb; '''16''' (1):42-54
Updated: Dec 16, 2017
Towards a repository for standardized medical image and signal case data annotated with ground truth.
Description: Deserno, Thomas M, et al. Towards a repository for standardized medical image and signal case data annotated with ground truth. ''J Digit Imaging''. 2012 Apr; '''25''' (2):213-26
Updated: Dec 16, 2017
Identification of common variants associated with human hippocampal and intracranial volumes.
Description: Stein, Jason L, et al. Identification of common variants associated with human hippocampal and intracranial volumes. ''Nat Genet''. 2012 Apr 15; '''44''' (5):552-61
Updated: Dec 16, 2017
Do brain image databanks support understanding of normal ageing brain structure? A systematic review.
Description: Dickie, David Alexander, et al. Do brain image databanks support understanding of normal ageing brain structure? A systematic review. ''Eur Radiol''. 2012 Jul; '''22''' (7):1385-94
Updated: Dec 16, 2017
Data sharing and publishing in the field of neuroimaging.
Description: Breeze, Janis L, et al. Data sharing and publishing in the field of neuroimaging. ''Gigascience''. 2012 Jul 12; '''1''' (1):9
Updated: Dec 16, 2017
A repository based on a dynamically extensible data model supporting multidisciplinary research in neuroscience.
Description: Corradi, Luca, et al. A repository based on a dynamically extensible data model supporting multidisciplinary research in neuroscience. ''BMC Med Inform Decis Mak''. 2012 Oct 8; '''12''': 115
Updated: Dec 16, 2017
Northwestern University Schizophrenia Data and Software Tool (NUSDAST).
Description: Wang, Lei, et al. Northwestern University Schizophrenia Data and Software Tool (NUSDAST). ''Front Neuroinform''. 2013; '''7''': 25
Updated: Dec 16, 2017
The Cerebral Blood Flow Biomedical Informatics Research Network (CBFBIRN) database and analysis pipeline for arterial spin labeling MRI data.
Description: Shin, David D, et al. The Cerebral Blood Flow Biomedical Informatics Research Network (CBFBIRN) database and analysis pipeline for arterial spin labeling MRI data. ''Front Neuroinform''. 2013; '''7''': 21
Updated: Dec 16, 2017
PoseShop: human image database construction and personalized content synthesis.
Description: Chen, Tao, et al. PoseShop: human image database construction and personalized content synthesis. ''IEEE Trans Vis Comput Graph''. 2013 May; '''19''' (5):824-37
Updated: Dec 16, 2017
Imaging human connectomes at the macroscale.
Description: Craddock, R Cameron, et al. Imaging human connectomes at the macroscale. ''Nat Methods''. 2013 Jun; '''10''' (6):524-39
Updated: Dec 16, 2017
The MCIC collection: a shared repository of multi-modal, multi-site brain image data from a clinical investigation of schizophrenia.
Description: Gollub, Randy L, et al. The MCIC collection: a shared repository of multi-modal, multi-site brain image data from a clinical investigation of schizophrenia. ''Neuroinformatics''. 2013 Jul; '''11''' (3):367-88
Updated: Dec 16, 2017
The Cancer Imaging Archive (TCIA): maintaining and operating a public information repository.
Description: Clark, Kenneth, et al. The Cancer Imaging Archive (TCIA): maintaining and operating a public information repository. ''J Digit Imaging''. 2013 Dec; '''26''' (6):1045-57
Updated: Dec 16, 2017
A simple tool for neuroimaging data sharing.
Description: Haselgrove, Christian, et al. A simple tool for neuroimaging data sharing. ''Front Neuroinform''. 2014; '''8''': 52
Updated: Sep 21, 2019
Big data, open science and the brain: lessons learned from genomics.
Description: Choudhury, Suparna, et al. Big data, open science and the brain: lessons learned from genomics. ''Front Hum Neurosci''. 2014; '''8''': 239
Updated: Dec 16, 2017
Brede tools and federating online neuroinformatics databases.
Description: Nielsen, Finn Arup. Brede tools and federating online neuroinformatics databases. ''Neuroinformatics''. 2014 Jan; '''12''' (1):27-37
Updated: Dec 16, 2017
Harnessing modern web application technology to create intuitive and efficient data visualization and sharing tools.
Description: Wood, Dylan, et al. Harnessing modern web application technology to create intuitive and efficient data visualization and sharing tools. ''Front Neuroinform''. 2014; '''8''': 71
Updated: Dec 16, 2017
Sharing privacy-sensitive access to neuroimaging and genetics data: a review and preliminary validation.
Description: Sarwate, Anand D, et al. Sharing privacy-sensitive access to neuroimaging and genetics data: a review and preliminary validation. ''Front Neuroinform''. 2014; '''8''': 35
Updated: Dec 16, 2017
The multi-modal Australian ScienceS Imaging and Visualization Environment (MASSIVE) high performance computing infrastructure: applications in neuroscience and neuroinformatics research.
Description: Goscinski, Wojtek J, et al. The multi-modal Australian ScienceS Imaging and Visualization Environment (MASSIVE) high performance computing infrastructure: applications in neuroscience and neuroinformatics research. ''Front Neuroinform''. 2014; '''8''': 30
Updated: Dec 16, 2017
A review of feature reduction techniques in neuroimaging.
Description: Mwangi, Benson, et al. A review of feature reduction techniques in neuroimaging. ''Neuroinformatics''. 2014 Apr; '''12''' (2):229-44
Updated: Dec 16, 2017
Genetic analysis of quantitative phenotypes in AD and MCI: imaging, cognition and biomarkers.
Description: Shen, Li, et al. Genetic analysis of quantitative phenotypes in AD and MCI: imaging, cognition and biomarkers. ''Brain Imaging Behav''. 2014 Jun; '''8''' (2):183-207
Updated: Dec 16, 2017
The ENIGMA Consortium: large-scale collaborative analyses of neuroimaging and genetic data.
Description: Thompson, Paul M, et al. The ENIGMA Consortium: large-scale collaborative analyses of neuroimaging and genetic data. ''Brain Imaging Behav''. 2014 Jun; '''8''' (2):153-82
Updated: Dec 16, 2017