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acpcdetect documentation - 2011-02-16 release
Description: Documentation for the acpcdetect module of ART
Updated: Feb 16, 2011
Installation information for acpcdetect - release 2011-02-16
Description: Information on how to install acpcdetect on Linux systems
Updated: Feb 16, 2011
PubMed Mentions ( 140 )+
Quantitative comparison of algorithms for inter-subject registration of 3D volumetric brain MRI scans.
Description: Ardekani, Babak A, et al. Quantitative comparison of algorithms for inter-subject registration of 3D volumetric brain MRI scans. ''J Neurosci Methods''. 2005 Mar 15; '''142''' (1):67-76
Updated: Dec 16, 2017
Implementation of high-dimensional feature map for segmentation of MR images.
Description: He, Renjie, et al. Implementation of high-dimensional feature map for segmentation of MR images. ''Ann Biomed Eng''. 2005 Oct; '''33''' (10):1439-48
Updated: Dec 16, 2017
Mindboggle: automated brain labeling with multiple atlases.
Description: Klein, Arno, et al. Mindboggle: automated brain labeling with multiple atlases. ''BMC Med Imaging''. 2005 Oct 5; '''5''': 7
Updated: Dec 16, 2017
Quantitation in gated perfusion SPECT imaging: the Cedars-Sinai approach.
Description: Germano, Guido, et al. Quantitation in gated perfusion SPECT imaging: the Cedars-Sinai approach. ''J Nucl Cardiol''. 2007 Jul; '''14''' (4):433-54
Updated: Dec 16, 2017
Validation of a new cardiac image fusion software for three-dimensional integration of myocardial perfusion SPECT and stand-alone 64-slice CT angiography.
Description: Gaemperli, Oliver, et al. Validation of a new cardiac image fusion software for three-dimensional integration of myocardial perfusion SPECT and stand-alone 64-slice CT angiography. ''Eur J Nucl Med Mol Imaging''. 2007 Jul; '''34''' (7):1097-106
Updated: Dec 16, 2017
Classification of breast masses via nonlinear transformation of features based on a kernel matrix.
Description: Mu, Tingting, et al. Classification of breast masses via nonlinear transformation of features based on a kernel matrix. ''Med Biol Eng Comput''. 2007 Aug; '''45''' (8):769-80
Updated: Dec 16, 2017
3D electron microscopy of biological nanomachines: principles and applications.
Description: Sorzano, C O S, et al. 3D electron microscopy of biological nanomachines: principles and applications. ''Eur Biophys J''. 2007 Nov; '''36''' (8):995-1013
Updated: Dec 16, 2017
Implementing cost-effective 3-dimensional ultrasound using visual probe localization.
Description: Ali, Aziah, et al. Implementing cost-effective 3-dimensional ultrasound using visual probe localization. ''J Digit Imaging''. 2007 Dec; '''20''' (4):352-66
Updated: Dec 16, 2017
Predicting toxicity through computers: a changing world.
Description: Benfenati, Emilio. Predicting toxicity through computers: a changing world. ''Chem Cent J''. 2007 Dec 18; '''1''': 32
Updated: Dec 16, 2017
Validation of phalanx bone three-dimensional surface segmentation from computed tomography images using laser scanning.
Description: DeVries, Nicole A, et al. Validation of phalanx bone three-dimensional surface segmentation from computed tomography images using laser scanning. ''Skeletal Radiol''. 2008 Jan; '''37''' (1):35-42
Updated: Dec 16, 2017
Ventral striatal blood flow is altered by acute nicotine but not withdrawal from nicotine.
Description: Tanabe, Jody, et al. Ventral striatal blood flow is altered by acute nicotine but not withdrawal from nicotine. ''Neuropsychopharmacology''. 2008 Feb; '''33''' (3):627-33
Updated: Dec 16, 2017
Diabetic retinopathy: a quadtree based blood vessel detection algorithm using RGB components in fundus images.
Description: Reza, Ahmed Wasif, et al. Diabetic retinopathy: a quadtree based blood vessel detection algorithm using RGB components in fundus images. ''J Med Syst''. 2008 Apr; '''32''' (2):147-55
Updated: Dec 16, 2017
EANM/ESC guidelines for radionuclide imaging of cardiac function.
Description: Hesse, B, et al. EANM/ESC guidelines for radionuclide imaging of cardiac function. ''Eur J Nucl Med Mol Imaging''. 2008 Apr; '''35''' (4):851-85
Updated: Dec 16, 2017
Decomposition cross-correlation for analysis of collagen matrix deformation by single smooth muscle cells.
Description: van den Akker, Jeroen, et al. Decomposition cross-correlation for analysis of collagen matrix deformation by single smooth muscle cells. ''Med Biol Eng Comput''. 2008 May; '''46''' (5):443-50
Updated: Dec 16, 2017
Do-it-yourself guide: how to use the modern single-molecule toolkit.
Description: Walter, Nils G, et al. Do-it-yourself guide: how to use the modern single-molecule toolkit. ''Nat Methods''. 2008 Jun; '''5''' (6):475-89
Updated: Dec 16, 2017
MR-based attenuation correction for torso-PET/MR imaging: pitfalls in mapping MR to CT data.
Description: Beyer, Thomas, et al. MR-based attenuation correction for torso-PET/MR imaging: pitfalls in mapping MR to CT data. ''Eur J Nucl Med Mol Imaging''. 2008 Jun; '''35''' (6):1142-6
Updated: Dec 16, 2017
The effect of improvisational music therapy on the treatment of depression: protocol for a randomised controlled trial.
Description: Erkkila, Jaakko, et al. The effect of improvisational music therapy on the treatment of depression: protocol for a randomised controlled trial. ''BMC Psychiatry''. 2008 Jun 28; '''8''': 50
Updated: Dec 16, 2017
Boundary conditions by Schwarz-Christoffel mapping in anatomically accurate hemodynamics.
Description: Boutsianis, Evangelos, et al. Boundary conditions by Schwarz-Christoffel mapping in anatomically accurate hemodynamics. ''Ann Biomed Eng''. 2008 Dec; '''36''' (12):2068-84
Updated: Dec 16, 2017
3D ultrasound-CT registration of the liver using combined landmark-intensity information.
Description: Lange, Thomas, et al. 3D ultrasound-CT registration of the liver using combined landmark-intensity information. ''Int J Comput Assist Radiol Surg''. 2009 Jan; '''4''' (1):79-88
Updated: Dec 16, 2017
Neuronal correlates of facial emotion discrimination in early onset schizophrenia.
Description: Seiferth, Nina Y, et al. Neuronal correlates of facial emotion discrimination in early onset schizophrenia. ''Neuropsychopharmacology''. 2009 Jan; '''34''' (2):477-87
Updated: Dec 16, 2017
Blood pressure waveform analysis by means of wavelet transform.
Description: De Melis, Mirko, et al. Blood pressure waveform analysis by means of wavelet transform. ''Med Biol Eng Comput''. 2009 Feb; '''47''' (2):165-73
Updated: Dec 16, 2017
How to successfully select and implement electronic health records (EHR) in small ambulatory practice settings.
Description: Lorenzi, Nancy M, et al. How to successfully select and implement electronic health records (EHR) in small ambulatory practice settings. ''BMC Med Inform Decis Mak''. 2009 Feb 23; '''9''': 15
Updated: Dec 16, 2017
Towards quantitative PET/MRI: a review of MR-based attenuation correction techniques.
Description: Hofmann, Matthias, et al. Towards quantitative PET/MRI: a review of MR-based attenuation correction techniques. ''Eur J Nucl Med Mol Imaging''. 2009 Mar; '''36 Suppl 1''': S93-104
Updated: Dec 16, 2017
Potential roles of force cues in human stance control.
Description: Cnyrim, Christian, et al. Potential roles of force cues in human stance control. ''Exp Brain Res''. 2009 Apr; '''194''' (3):419-33
Updated: Dec 16, 2017
Marker-free image registration of electron tomography tilt-series.
Description: Sorzano, Carlos Oscar Sanchez, et al. Marker-free image registration of electron tomography tilt-series. ''BMC Bioinformatics''. 2009 Apr 27; '''10''': 124
Updated: Dec 16, 2017
A voxel-based diffusion tensor imaging study of white matter in bipolar disorder.
Description: Mahon, Katie, et al. A voxel-based diffusion tensor imaging study of white matter in bipolar disorder. ''Neuropsychopharmacology''. 2009 May; '''34''' (6):1590-600
Updated: Dec 16, 2017
Shape priors for segmentation of the cervix region within uterine cervix images.
Description: Lotenberg, Shelly, et al. Shape priors for segmentation of the cervix region within uterine cervix images. ''J Digit Imaging''. 2009 Jun; '''22''' (3):286-96
Updated: Dec 16, 2017
Model-based automatic detection of the anterior and posterior commissures on MRI scans.
Description: Ardekani, Babak A, et al. Model-based automatic detection of the anterior and posterior commissures on MRI scans. ''Neuroimage''. 2009 Jul 1; '''46''' (3):677-82
Updated: Oct 12, 2019
Semi-automated phalanx bone segmentation using the expectation maximization algorithm.
Description: Ramme, Austin J, et al. Semi-automated phalanx bone segmentation using the expectation maximization algorithm. ''J Digit Imaging''. 2009 Oct; '''22''' (5):483-91
Updated: Dec 16, 2017
Quantitative architectural analysis: a new approach to cortical mapping.
Description: Schleicher, Axel, et al. Quantitative architectural analysis: a new approach to cortical mapping. ''J Autism Dev Disord''. 2009 Nov; '''39''' (11):1568-81
Updated: Dec 16, 2017
Fast and accurate registration techniques for affine and nonrigid alignment of MR brain images.
Description: Liu, Jia-Xiu, et al. Fast and accurate registration techniques for affine and nonrigid alignment of MR brain images. ''Ann Biomed Eng''. 2010 Jan; '''38''' (1):138-57
Updated: Dec 16, 2017
Visualization of image data from cells to organisms.
Description: Walter, Thomas, et al. Visualization of image data from cells to organisms. ''Nat Methods''. 2010 Mar; '''7''' (3 Suppl):S26-41
Updated: Dec 16, 2017
Effect of an individually tailored one-year energy balance programme on body weight, body composition and lifestyle in recent retirees: a cluster randomised controlled trial.
Description: Werkman, Andrea, et al. Effect of an individually tailored one-year energy balance programme on body weight, body composition and lifestyle in recent retirees: a cluster randomised controlled trial. ''BMC Public Health''. 2010 Mar 5; '''10''': 110
Updated: Dec 16, 2017
Antipointing: perception-based visual information renders an offline mode of control.
Description: Maraj, Anika, et al. Antipointing: perception-based visual information renders an offline mode of control. ''Exp Brain Res''. 2010 Apr; '''202''' (1):55-64
Updated: Dec 16, 2017
Evaluation of volume-based and surface-based brain image registration methods.
Description: Klein, Arno, et al. Evaluation of volume-based and surface-based brain image registration methods. ''Neuroimage''. 2010 May 15; '''51''' (1):214-20
Updated: Sep 21, 2019
Improving intersubject image registration using tissue-class information benefits robustness and accuracy of multi-atlas based anatomical segmentation.
Description: Heckemann, Rolf A, et al. Improving intersubject image registration using tissue-class information benefits robustness and accuracy of multi-atlas based anatomical segmentation. ''Neuroimage''. 2010 May 15; '''51''' (1):221-7
Updated: Sep 21, 2019
Analysing the length of care episode after hip fracture: a nonparametric and a parametric Bayesian approach.
Description: Riihimaki, Jaakko, et al. Analysing the length of care episode after hip fracture: a nonparametric and a parametric Bayesian approach. ''Health Care Manag Sci''. 2010 Jun; '''13''' (2):170-81
Updated: Dec 16, 2017
Live augmented reality: a new visualization method for laparoscopic surgery using continuous volumetric computed tomography.
Description: Shekhar, Raj, et al. Live augmented reality: a new visualization method for laparoscopic surgery using continuous volumetric computed tomography. ''Surg Endosc''. 2010 Aug; '''24''' (8):1976-85
Updated: Dec 16, 2017
Medial prefrontal cortex pathology in schizophrenia as revealed by convergent findings from multimodal imaging.
Description: Pomarol-Clotet, E, et al. Medial prefrontal cortex pathology in schizophrenia as revealed by convergent findings from multimodal imaging. ''Mol Psychiatry''. 2010 Aug; '''15''' (8):823-30
Updated: Dec 16, 2017
Voxel-based analysis of the diffusion tensor.
Description: Abe, Osamu, et al. Voxel-based analysis of the diffusion tensor. ''Neuroradiology''. 2010 Aug; '''52''' (8):699-710
Updated: Dec 16, 2017
Parallel processing of visual space by neighboring neurons in mouse visual cortex.
Description: Smith, Spencer L, et al. Parallel processing of visual space by neighboring neurons in mouse visual cortex. ''Nat Neurosci''. 2010 Sep; '''13''' (9):1144-9
Updated: Dec 16, 2017
Differential activation of memory-relevant brain regions during a dialysis cycle.
Description: Lux, Silke, et al. Differential activation of memory-relevant brain regions during a dialysis cycle. ''Kidney Int''. 2010 Oct; '''78''' (8):794-802
Updated: Dec 16, 2017
Shifting from region of interest (ROI) to voxel-based analysis in human brain mapping.
Description: Astrakas, Loukas G, et al. Shifting from region of interest (ROI) to voxel-based analysis in human brain mapping. ''Pediatr Radiol''. 2010 Dec; '''40''' (12):1857-67
Updated: Dec 16, 2017
High efficient system for automatic classification of the electrocardiogram beats.
Description: Zadeh, Ataollah Ebrahim, et al. High efficient system for automatic classification of the electrocardiogram beats. ''Ann Biomed Eng''. 2011 Mar; '''39''' (3):996-1011
Updated: Dec 16, 2017
An expectation-maximisation approach for simultaneous pixel classification and tracer kinetic modelling in dynamic contrast enhanced-magnetic resonance imaging.
Description: Sansone, Mario, et al. An expectation-maximisation approach for simultaneous pixel classification and tracer kinetic modelling in dynamic contrast enhanced-magnetic resonance imaging. ''Med Biol Eng Comput''. 2011 Apr; '''49''' (4):485-95
Updated: Dec 16, 2017
Effect of modafinil on learning and task-related brain activity in methamphetamine-dependent and healthy individuals.
Description: Ghahremani, Dara G, et al. Effect of modafinil on learning and task-related brain activity in methamphetamine-dependent and healthy individuals. ''Neuropsychopharmacology''. 2011 Apr; '''36''' (5):950-9
Updated: Dec 16, 2017
SPECT imaging evaluation in movement disorders: far beyond visual assessment.
Description: Badiavas, Kosmas, et al. SPECT imaging evaluation in movement disorders: far beyond visual assessment. ''Eur J Nucl Med Mol Imaging''. 2011 Apr; '''38''' (4):764-73
Updated: Dec 16, 2017
Echocardiographic prediction of outcome after cardiac resynchronization therapy: conventional methods and recent developments.
Description: Leenders, Geert E, et al. Echocardiographic prediction of outcome after cardiac resynchronization therapy: conventional methods and recent developments. ''Heart Fail Rev''. 2011 May; '''16''' (3):235-50
Updated: Dec 16, 2017
EM segmentation of the distal femur and proximal tibia: a high-throughput approach to anatomic surface generation.
Description: Ramme, Austin J, et al. EM segmentation of the distal femur and proximal tibia: a high-throughput approach to anatomic surface generation. ''Ann Biomed Eng''. 2011 May; '''39''' (5):1555-62
Updated: Dec 16, 2017
Quantitative evaluation for accumulative calibration error and video-CT registration errors in electromagnetic-tracked endoscopy.
Description: Liu, Sheena Xin, et al. Quantitative evaluation for accumulative calibration error and video-CT registration errors in electromagnetic-tracked endoscopy. ''Int J Comput Assist Radiol Surg''. 2011 May; '''6''' (3):407-19
Updated: Dec 16, 2017
A hybrid strategy to integrate surface-based and mutual-information-based methods for co-registering brain SPECT and MR images.
Description: Liao, Yuan-Lin, et al. A hybrid strategy to integrate surface-based and mutual-information-based methods for co-registering brain SPECT and MR images. ''Med Biol Eng Comput''. 2011 Jun; '''49''' (6):671-85
Updated: Dec 16, 2017
Gray matter volume decrements in preterm children with periventricular leukomalacia.
Description: Zubiaurre-Elorza, Leire, et al. Gray matter volume decrements in preterm children with periventricular leukomalacia. ''Pediatr Res''. 2011 Jun; '''69''' (6):554-60
Updated: Dec 16, 2017
Automatic morphometry in Alzheimer's disease and mild cognitive impairment.
Description: Heckemann, Rolf A, et al. Automatic morphometry in Alzheimer's disease and mild cognitive impairment. ''Neuroimage''. 2011 Jun 15; '''56''' (4):2024-37
Updated: Sep 21, 2019
Imaging analysis of clock neurons reveals light buffers the wake-promoting effect of dopamine.
Description: Shang, Yuhua, et al. Imaging analysis of clock neurons reveals light buffers the wake-promoting effect of dopamine. ''Nat Neurosci''. 2011 Jun 19; '''14''' (7):889-95
Updated: Dec 16, 2017
Fusion of metabolomics and proteomics data for biomarkers discovery: case study on the experimental autoimmune encephalomyelitis.
Description: Blanchet, Lionel, et al. Fusion of metabolomics and proteomics data for biomarkers discovery: case study on the experimental autoimmune encephalomyelitis. ''BMC Bioinformatics''. 2011 Jun 22; '''12''': 254
Updated: Dec 16, 2017
Augmented reality and image overlay navigation with OsiriX in laparoscopic and robotic surgery: not only a matter of fashion.
Description: Volonte, Francesco, et al. Augmented reality and image overlay navigation with OsiriX in laparoscopic and robotic surgery: not only a matter of fashion. ''J Hepatobiliary Pancreat Sci''. 2011 Jul; '''18''' (4):506-9
Updated: Dec 16, 2017
Volumetric real-time multispectral optoacoustic tomography of biomarkers.
Description: Razansky, Daniel, et al. Volumetric real-time multispectral optoacoustic tomography of biomarkers. ''Nat Protoc''. 2011 Jul 7; '''6''' (8):1121-9
Updated: Dec 16, 2017
The DIADEM metric: comparing multiple reconstructions of the same neuron.
Description: Gillette, Todd A, et al. The DIADEM metric: comparing multiple reconstructions of the same neuron. ''Neuroinformatics''. 2011 Sep; '''9''' (2-3):233-45
Updated: Dec 16, 2017
The effect of ageing on multisensory integration for the control of movement timing.
Description: Elliott, Mark T, et al. The effect of ageing on multisensory integration for the control of movement timing. ''Exp Brain Res''. 2011 Sep; '''213''' (2-3):291-8
Updated: Dec 16, 2017
Miniaturized integration of a fluorescence microscope.
Description: Ghosh, Kunal K, et al. Miniaturized integration of a fluorescence microscope. ''Nat Methods''. 2011 Sep 11; '''8''' (10):871-8
Updated: Dec 16, 2017
Correspondence between gated SPECT and cardiac magnetic resonance quantified myocardial wall thickening.
Description: Nichols, Kenneth J, et al. Correspondence between gated SPECT and cardiac magnetic resonance quantified myocardial wall thickening. ''Int J Cardiovasc Imaging''. 2011 Oct; '''27''' (7):1095-104
Updated: Dec 16, 2017
Quantification of myocardial perfusion SPECT using freeware package (cardioBull).
Description: Okuda, Koichi, et al. Quantification of myocardial perfusion SPECT using freeware package (cardioBull). ''Ann Nucl Med''. 2011 Oct; '''25''' (8):571-9
Updated: Dec 16, 2017
A fully-automatic caudate nucleus segmentation of brain MRI: application in volumetric analysis of pediatric attention-deficit/hyperactivity disorder.
Description: Igual, Laura, et al. A fully-automatic caudate nucleus segmentation of brain MRI: application in volumetric analysis of pediatric attention-deficit/hyperactivity disorder. ''Biomed Eng Online''. 2011 Dec 5; '''10''': 105
Updated: Dec 16, 2017
ADHD classification by a texture analysis of anatomical brain MRI data.
Description: Chang, Che-Wei, et al. ADHD classification by a texture analysis of anatomical brain MRI data. ''Front Syst Neurosci''. 2012; '''6''': 66
Updated: Sep 21, 2019
Automated measurement of the human corpus callosum using MRI.
Description: Herron, Timothy J, et al. Automated measurement of the human corpus callosum using MRI. ''Front Neuroinform''. 2012; '''6''': 25
Updated: Sep 21, 2019
Three-dimensional interactive and stereotactic human brain atlas of white matter tracts.
Description: Nowinski, Wieslaw L, et al. Three-dimensional interactive and stereotactic human brain atlas of white matter tracts. ''Neuroinformatics''. 2012 Jan; '''10''' (1):33-55
Updated: Dec 16, 2017
Gray matter volumes in obsessive-compulsive disorder before and after fluoxetine or cognitive-behavior therapy: a randomized clinical trial.
Description: Hoexter, Marcelo Queiroz, et al. Gray matter volumes in obsessive-compulsive disorder before and after fluoxetine or cognitive-behavior therapy: a randomized clinical trial. ''Neuropsychopharmacology''. 2012 Feb; '''37''' (3):734-45
Updated: Dec 16, 2017
Surgical vision.
Description: Stoyanov, Danail. Surgical vision. ''Ann Biomed Eng''. 2012 Feb; '''40''' (2):332-45
Updated: Dec 16, 2017
Identifying biological landmarks using a novel cell measuring image analysis tool: Cell-o-Tape.
Description: French, Andrew P, et al. Identifying biological landmarks using a novel cell measuring image analysis tool: Cell-o-Tape. ''Plant Methods''. 2012 Mar 2; '''8''': 7
Updated: Dec 16, 2017
Prehistoric proteins: Raising the dead.
Description: Pearson, Helen. Prehistoric proteins: Raising the dead. ''Nature''. 2012 Mar 21; '''483''' (7390):390-3
Updated: Dec 16, 2017
Co-registration of glucose metabolism with positron emission tomography and vascularity with fluorescent diffuse optical tomography in mouse tumors.
Description: Tong, Xiao, et al. Co-registration of glucose metabolism with positron emission tomography and vascularity with fluorescent diffuse optical tomography in mouse tumors. ''EJNMMI Res''. 2012 May 7; '''2''' (1):19
Updated: Dec 16, 2017
Hypervigilance for fear after basolateral amygdala damage in humans.
Description: Terburg, D, et al. Hypervigilance for fear after basolateral amygdala damage in humans. ''Transl Psychiatry''. 2012 May 15; '''2''': e115
Updated: Dec 16, 2017
BDNF Val66Met genotype modulates the effect of childhood adversity on subgenual anterior cingulate cortex volume in healthy subjects.
Description: Gerritsen, L, et al. BDNF Val66Met genotype modulates the effect of childhood adversity on subgenual anterior cingulate cortex volume in healthy subjects. ''Mol Psychiatry''. 2012 Jun; '''17''' (6):597-603
Updated: Dec 16, 2017
Robust detection of traumatic axonal injury in individual mild traumatic brain injury patients: intersubject variation, change over time and bidirectional changes in anisotropy.
Description: Lipton, Michael L, et al. Robust detection of traumatic axonal injury in individual mild traumatic brain injury patients: intersubject variation, change over time and bidirectional changes in anisotropy. ''Brain Imaging Behav''. 2012 Jun; '''6''' (2):329-42
Updated: Dec 16, 2017
Tools to analyse and display variations in anatomical delineation.
Description: Ebert, Martin A, et al. Tools to analyse and display variations in anatomical delineation. ''Australas Phys Eng Sci Med''. 2012 Jun; '''35''' (2):159-64
Updated: Dec 16, 2017
BioImageXD: an open, general-purpose and high-throughput image-processing platform.
Description: Kankaanpaa, Pasi, et al. BioImageXD: an open, general-purpose and high-throughput image-processing platform. ''Nat Methods''. 2012 Jun 28; '''9''' (7):683-9
Updated: Dec 16, 2017
Biological imaging software tools.
Description: Eliceiri, Kevin W, et al. Biological imaging software tools. ''Nat Methods''. 2012 Jun 28; '''9''' (7):697-710
Updated: Dec 16, 2017
Effects of long-term intake of lactotripeptides on cardiovascular risk factors in hypertensive subjects.
Description: Jauhiainen, T, et al. Effects of long-term intake of lactotripeptides on cardiovascular risk factors in hypertensive subjects. ''Eur J Clin Nutr''. 2012 Jul; '''66''' (7):843-9
Updated: Dec 16, 2017
MicrobesFlux: a web platform for drafting metabolic models from the KEGG database.
Description: Feng, Xueyang, et al. MicrobesFlux: a web platform for drafting metabolic models from the KEGG database. ''BMC Syst Biol''. 2012 Aug 2; '''6''': 94
Updated: Dec 16, 2017
Automated analysis of small animal PET studies through deformable registration to an atlas.
Description: Gutierrez, Daniel F, et al. Automated analysis of small animal PET studies through deformable registration to an atlas. ''Eur J Nucl Med Mol Imaging''. 2012 Nov; '''39''' (11):1807-20
Updated: Dec 16, 2017
A computer-assisted model for detection of MRI signs of Crohn's disease activity: future or fiction?
Description: Tielbeek, Jeroen A W, et al. A computer-assisted model for detection of MRI signs of Crohn's disease activity: future or fiction? ''Abdom Imaging''. 2012 Dec; '''37''' (6):967-73
Updated: Dec 16, 2017
An automated method for analysis of microcirculation videos for accurate assessment of tissue perfusion.
Description: Demir, Sumeyra U, et al. An automated method for analysis of microcirculation videos for accurate assessment of tissue perfusion. ''BMC Med Imaging''. 2012 Dec 21; '''12''': 37
Updated: Dec 16, 2017
Cortical shape and curvedness analysis of structural deficits in remitting and non-remitting depression.
Description: Liao, Yuan-Lin, et al. Cortical shape and curvedness analysis of structural deficits in remitting and non-remitting depression. ''PLoS One''. 2013; '''8''' (7):e68625
Updated: Dec 16, 2017
Dissociable somatotopic representations of Chinese action verbs in the motor and premotor cortex.
Description: Wu, Haiyan, et al. Dissociable somatotopic representations of Chinese action verbs in the motor and premotor cortex. ''Sci Rep''. 2013; '''3''': 2049
Updated: Dec 16, 2017
FocusDET, a new toolbox for SISCOM analysis. Evaluation of the registration accuracy using Monte Carlo simulation.
Description: Marti Fuster, Berta, et al. FocusDET, a new toolbox for SISCOM analysis. Evaluation of the registration accuracy using Monte Carlo simulation. ''Neuroinformatics''. 2013 Jan; '''11''' (1):77-89
Updated: Dec 16, 2017
Image registration improves human knee cartilage T1 mapping with delayed gadolinium-enhanced MRI of cartilage (dGEMRIC).
Description: Bron, Esther E, et al. Image registration improves human knee cartilage T1 mapping with delayed gadolinium-enhanced MRI of cartilage (dGEMRIC). ''Eur Radiol''. 2013 Jan; '''23''' (1):246-52
Updated: Dec 16, 2017
Integration method of 3D MR spectroscopy into treatment planning system for glioblastoma IMRT dose painting with integrated simultaneous boost.
Description: Ken, Soleakhena, et al. Integration method of 3D MR spectroscopy into treatment planning system for glioblastoma IMRT dose painting with integrated simultaneous boost. ''Radiat Oncol''. 2013 Jan 2; '''8''': 1
Updated: Dec 16, 2017
Toward in vivo histology: a comparison of quantitative susceptibility mapping (QSM) with magnitude-, phase-, and R2*-imaging at ultra-high magnetic field strength.
Description: Deistung, Andreas, et al. Toward in vivo histology: a comparison of quantitative susceptibility mapping (QSM) with magnitude-, phase-, and R2*-imaging at ultra-high magnetic field strength. ''Neuroimage''. 2013 Jan 15; '''65''': 299-314
Updated: Sep 21, 2019
The DTNBP1 (dysbindin-1) gene variant rs2619522 is associated with variation of hippocampal and prefrontal grey matter volumes in humans.
Description: Trost, S, et al. The DTNBP1 (dysbindin-1) gene variant rs2619522 is associated with variation of hippocampal and prefrontal grey matter volumes in humans. ''Eur Arch Psychiatry Clin Neurosci''. 2013 Feb; '''263''' (1):53-63
Updated: Dec 16, 2017
Automated sedation outperforms manual administration of propofol and remifentanil in critically ill patients with deep sedation: a randomized phase II trial.
Description: Le Guen, Morgan, et al. Automated sedation outperforms manual administration of propofol and remifentanil in critically ill patients with deep sedation: a randomized phase II trial. ''Intensive Care Med''. 2013 Mar; '''39''' (3):454-62
Updated: Dec 16, 2017
Cardiovascular imaging 2012 in the International Journal of Cardiovascular Imaging.
Description: Bezerra, Hiram G, et al. Cardiovascular imaging 2012 in the International Journal of Cardiovascular Imaging. ''Int J Cardiovasc Imaging''. 2013 Apr; '''29''' (4):725-36
Updated: Dec 16, 2017
Feature selection in computer-aided breast cancer diagnosis via dynamic contrast-enhanced magnetic resonance images.
Description: Rakoczy, Megan, et al. Feature selection in computer-aided breast cancer diagnosis via dynamic contrast-enhanced magnetic resonance images. ''J Digit Imaging''. 2013 Apr; '''26''' (2):198-208
Updated: Dec 16, 2017
iBEAT: A toolbox for infant brain magnetic resonance image processing.
Description: Dai, Yakang, et al. iBEAT: A toolbox for infant brain magnetic resonance image processing. ''Neuroinformatics''. 2013 Apr; '''11''' (2):211-25
Updated: Dec 16, 2017
Longitudinally guided level sets for consistent tissue segmentation of neonates.
Description: Wang, Li, et al. Longitudinally guided level sets for consistent tissue segmentation of neonates. ''Hum Brain Mapp''. 2013 Apr; '''34''' (4):956-72
Updated: Sep 21, 2019
Live imaging of astrocyte responses to acute injury reveals selective juxtavascular proliferation.
Description: Bardehle, Sophia, et al. Live imaging of astrocyte responses to acute injury reveals selective juxtavascular proliferation. ''Nat Neurosci''. 2013 May; '''16''' (5):580-6
Updated: Dec 16, 2017
An electronic portfolio for quantitative assessment of surgical skills in undergraduate medical education.
Description: Sanchez Gomez, Serafin, et al. An electronic portfolio for quantitative assessment of surgical skills in undergraduate medical education. ''BMC Med Educ''. 2013 May 6; '''13''': 65
Updated: Dec 16, 2017
Imaging human connectomes at the macroscale.
Description: Craddock, R Cameron, et al. Imaging human connectomes at the macroscale. ''Nat Methods''. 2013 Jun; '''10''' (6):524-39
Updated: Dec 16, 2017
Comparative exploration of whole-body MR through locally rigid transforms.
Description: Dzyubachyk, Oleh, et al. Comparative exploration of whole-body MR through locally rigid transforms. ''Int J Comput Assist Radiol Surg''. 2013 Jul; '''8''' (4):635-47
Updated: Dec 16, 2017
Effects of forward model errors on EEG source localization.
Description: Akalin Acar, Zeynep, et al. Effects of forward model errors on EEG source localization. ''Brain Topogr''. 2013 Jul; '''26''' (3):378-96
Updated: Dec 16, 2017
PRoNTo: pattern recognition for neuroimaging toolbox.
Description: Schrouff, J, et al. PRoNTo: pattern recognition for neuroimaging toolbox. ''Neuroinformatics''. 2013 Jul; '''11''' (3):319-37
Updated: Dec 16, 2017
Registration of FA and T1-weighted MRI data of healthy human brain based on template matching and normalized cross-correlation.
Description: Malinsky, Milos, et al. Registration of FA and T1-weighted MRI data of healthy human brain based on template matching and normalized cross-correlation. ''J Digit Imaging''. 2013 Aug; '''26''' (4):774-85
Updated: Dec 16, 2017
Automatic lumen segmentation in IVOCT images using binary morphological reconstruction.
Description: Moraes, Matheus Cardoso, et al. Automatic lumen segmentation in IVOCT images using binary morphological reconstruction. ''Biomed Eng Online''. 2013 Aug 9; '''12''': 78
Updated: Dec 16, 2017
Innovative continuous non-invasive cuffless blood pressure monitoring based on photoplethysmography technology.
Description: Ruiz-Rodriguez, Juan C, et al. Innovative continuous non-invasive cuffless blood pressure monitoring based on photoplethysmography technology. ''Intensive Care Med''. 2013 Sep; '''39''' (9):1618-25
Updated: Dec 16, 2017
HERMES: towards an integrated toolbox to characterize functional and effective brain connectivity.
Description: Niso, Guiomar, et al. HERMES: towards an integrated toolbox to characterize functional and effective brain connectivity. ''Neuroinformatics''. 2013 Oct; '''11''' (4):405-34
Updated: Dec 16, 2017
Noninvasive technique for monitoring drug transport through the murine cochlea using micro-computed tomography.
Description: Haghpanahi, Masoumeh, et al. Noninvasive technique for monitoring drug transport through the murine cochlea using micro-computed tomography. ''Ann Biomed Eng''. 2013 Oct; '''41''' (10):2130-42
Updated: Dec 16, 2017
Novel registration-based framework for CT angiography in lower legs.
Description: Peter, Roman, et al. Novel registration-based framework for CT angiography in lower legs. ''Med Biol Eng Comput''. 2013 Oct; '''51''' (10):1079-89
Updated: Dec 16, 2017
Recommendations to improve imaging and analysis of brain lesion load and atrophy in longitudinal studies of multiple sclerosis.
Description: Vrenken, H, et al. Recommendations to improve imaging and analysis of brain lesion load and atrophy in longitudinal studies of multiple sclerosis. ''J Neurol''. 2013 Oct; '''260''' (10):2458-71
Updated: Dec 16, 2017
Projection-based visual guidance for robot-aided RF needle insertion.
Description: Wen, Rong, et al. Projection-based visual guidance for robot-aided RF needle insertion. ''Int J Comput Assist Radiol Surg''. 2013 Nov; '''8''' (6):1015-25
Updated: Dec 16, 2017
Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy.
Description: Wu, Yicong, et al. Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy. ''Nat Biotechnol''. 2013 Nov; '''31''' (11):1032-8
Updated: Dec 16, 2017
Contextual modulation of medial prefrontal cortex to neutral faces in anxious adolescents.
Description: Peris, Tara S, et al. Contextual modulation of medial prefrontal cortex to neutral faces in anxious adolescents. ''Biol Mood Anxiety Disord''. 2013 Nov 15; '''3''' (1):18
Updated: Dec 16, 2017
A new blood vessel extraction technique using edge enhancement and object classification.
Description: Badsha, Shahriar, et al. A new blood vessel extraction technique using edge enhancement and object classification. ''J Digit Imaging''. 2013 Dec; '''26''' (6):1107-15
Updated: Dec 16, 2017
Automatic active contour-based segmentation and classification of carotid artery ultrasound images.
Description: Chaudhry, Asmatullah, et al. Automatic active contour-based segmentation and classification of carotid artery ultrasound images. ''J Digit Imaging''. 2013 Dec; '''26''' (6):1071-81
Updated: Dec 16, 2017
State-dependent changes in hippocampal grey matter in depression.
Description: Arnone, D, et al. State-dependent changes in hippocampal grey matter in depression. ''Mol Psychiatry''. 2013 Dec; '''18''' (12):1265-72
Updated: Dec 16, 2017
Cerebellar language mapping and cerebral language dominance in pediatric epilepsy surgery patients.
Description: Gelinas, Jennifer N, et al. Cerebellar language mapping and cerebral language dominance in pediatric epilepsy surgery patients. ''Neuroimage Clin''. 2014; '''6''': 296-306
Updated: Dec 16, 2017
Computerized database management system for breast cancer patients.
Description: Sim, Kok Swee, et al. Computerized database management system for breast cancer patients. ''Springerplus''. 2014; '''3''': 268
Updated: Dec 16, 2017
Long-term oral methylphenidate treatment in adolescent and adult rats: differential effects on brain morphology and function.
Description: van der Marel, Kajo, et al. Long-term oral methylphenidate treatment in adolescent and adult rats: differential effects on brain morphology and function. ''Neuropsychopharmacology''. 2014 Jan; '''39''' (2):263-73
Updated: Dec 16, 2017
Emotional contagion for pain is intact in autism spectrum disorders.
Description: Hadjikhani, N, et al. Emotional contagion for pain is intact in autism spectrum disorders. ''Transl Psychiatry''. 2014 Jan 14; '''4''': e343
Updated: Dec 16, 2017
Application of fused lasso logistic regression to the study of corpus callosum thickness in early Alzheimer's disease.
Description: Lee, Sang H, et al. Application of fused lasso logistic regression to the study of corpus callosum thickness in early Alzheimer's disease. ''J Neurosci Methods''. 2014 Jan 15; '''221''': 78-84
Updated: Oct 12, 2019
Automatic detection of left and right ventricles from CTA enables efficient alignment of anatomy with myocardial perfusion data.
Description: Piccinelli, Marina, et al. Automatic detection of left and right ventricles from CTA enables efficient alignment of anatomy with myocardial perfusion data. ''J Nucl Cardiol''. 2014 Feb; '''21''' (1):96-108
Updated: Dec 16, 2017
The INSPIRED study: a randomised controlled trial of the Whole Person Model of disease self-management for people with type 2 diabetes.
Description: Clarke, David M, et al. The INSPIRED study: a randomised controlled trial of the Whole Person Model of disease self-management for people with type 2 diabetes. ''BMC Public Health''. 2014 Feb 8; '''14''': 134
Updated: Dec 16, 2017
Changing value through cued approach: an automatic mechanism of behavior change.
Description: Schonberg, Tom, et al. Changing value through cued approach: an automatic mechanism of behavior change. ''Nat Neurosci''. 2014 Apr; '''17''' (4):625-30
Updated: Dec 16, 2017
Individual differences in attentional bias associated with cocaine dependence are related to varying engagement of neural processing networks.
Description: Kilts, Clint D, et al. Individual differences in attentional bias associated with cocaine dependence are related to varying engagement of neural processing networks. ''Neuropsychopharmacology''. 2014 Apr; '''39''' (5):1135-47
Updated: Dec 16, 2017
Spontaneous fluctuations in neural responses to heartbeats predict visual detection.
Description: Park, Hyeong-Dong, et al. Spontaneous fluctuations in neural responses to heartbeats predict visual detection. ''Nat Neurosci''. 2014 Apr; '''17''' (4):612-8
Updated: Dec 16, 2017
Clinical, cognitive, and behavioural correlates of white matter damage in progressive supranuclear palsy.
Description: Agosta, Federica, et al. Clinical, cognitive, and behavioural correlates of white matter damage in progressive supranuclear palsy. ''J Neurol''. 2014 May; '''261''' (5):913-24
Updated: Dec 16, 2017
"Occult" post-contrast signal enhancement in pediatric diffuse intrinsic pontine glioma is the MRI marker of angiogenesis?
Description: Conway, Ashley E, et al. "Occult" post-contrast signal enhancement in pediatric diffuse intrinsic pontine glioma is the MRI marker of angiogenesis? ''Neuroradiology''. 2014 May; '''56''' (5):405-12
Updated: Dec 16, 2017
Evaluation of subcortical grey matter abnormalities in patients with MRI-negative cortical epilepsy determined through structural and tensor magnetic resonance imaging.
Description: Peng, Syu-Jyun, et al. Evaluation of subcortical grey matter abnormalities in patients with MRI-negative cortical epilepsy determined through structural and tensor magnetic resonance imaging. ''BMC Neurol''. 2014 May 14; '''14''': 104
Updated: Dec 16, 2017
3D movement correction of CT brain perfusion image data of patients with acute ischemic stroke.
Description: Fahmi, Fahmi, et al. 3D movement correction of CT brain perfusion image data of patients with acute ischemic stroke. ''Neuroradiology''. 2014 Jun; '''56''' (6):445-52
Updated: Dec 16, 2017
Computer methods for follow-up study of hemodynamic and disease progression in the stented coronary artery by fusing IVUS and X-ray angiography.
Description: Vukicevic, Arso M, et al. Computer methods for follow-up study of hemodynamic and disease progression in the stented coronary artery by fusing IVUS and X-ray angiography. ''Med Biol Eng Comput''. 2014 Jun; '''52''' (6):539-56
Updated: Dec 16, 2017
Evaluation of dental morphometrics during the orthodontic treatment.
Description: Kasparova, Magdalena, et al. Evaluation of dental morphometrics during the orthodontic treatment. ''Biomed Eng Online''. 2014 Jun 3; '''13''': 68
Updated: Dec 16, 2017
Intensity based methods for brain MRI longitudinal registration. A study on multiple sclerosis patients.
Description: Diez, Yago, et al. Intensity based methods for brain MRI longitudinal registration. A study on multiple sclerosis patients. ''Neuroinformatics''. 2014 Jul; '''12''' (3):365-79
Updated: Dec 16, 2017
The effects of computed tomography image characteristics and knot spacing on the spatial accuracy of B-spline deformable image registration in the head and neck geometry.
Description: Brouwer, Charlotte L, et al. The effects of computed tomography image characteristics and knot spacing on the spatial accuracy of B-spline deformable image registration in the head and neck geometry. ''Radiat Oncol''. 2014 Jul 29; '''9''': 169
Updated: Dec 16, 2017
Comparative performance of descriptors in a multiple linear and Kriging models: a case study on the acute toxicity of organic chemicals to algae.
Description: Tugcu, Gulcin, et al. Comparative performance of descriptors in a multiple linear and Kriging models: a case study on the acute toxicity of organic chemicals to algae. ''Environ Sci Pollut Res Int''. 2014 Oct; '''21''' (20):11924-32
Updated: Dec 16, 2017
Hippocampal atrophy in major depression: a function of childhood maltreatment rather than diagnosis?
Description: Opel, Nils, et al. Hippocampal atrophy in major depression: a function of childhood maltreatment rather than diagnosis? ''Neuropsychopharmacology''. 2014 Nov; '''39''' (12):2723-31
Updated: Dec 16, 2017
Brain-shift compensation by non-rigid registration of intra-operative ultrasound images with preoperative MR images based on residual complexity.
Description: Farnia, P, et al. Brain-shift compensation by non-rigid registration of intra-operative ultrasound images with preoperative MR images based on residual complexity. ''Int J Comput Assist Radiol Surg''. 2015 May; '''10''' (5):555-62
Updated: Dec 16, 2017
Selective reduction of cerebral cortex GABA neurons in a late gestation model of fetal alcohol spectrum disorder.
Description: Smiley, John F, et al. Selective reduction of cerebral cortex GABA neurons in a late gestation model of fetal alcohol spectrum disorder. ''Alcohol''. 2015 Sep; '''49''' (6):571-80
Updated: Oct 12, 2019
Inter-Method Discrepancies in Brain Volume Estimation May Drive Inconsistent Findings in Autism.
Description: Katuwal, Gajendra J, et al. Inter-Method Discrepancies in Brain Volume Estimation May Drive Inconsistent Findings in Autism. ''Front Neurosci''. 2016; '''10''': 439
Updated: Sep 21, 2019
Medial Prefrontal and Anterior Insular Connectivity in Early Schizophrenia and Major Depressive Disorder: A Resting Functional MRI Evaluation of Large-Scale Brain Network Models.
Description: Penner, Jacob, et al. Medial Prefrontal and Anterior Insular Connectivity in Early Schizophrenia and Major Depressive Disorder: A Resting Functional MRI Evaluation of Large-Scale Brain Network Models. ''Front Hum Neurosci''. 2016; '''10''': 132
Updated: Sep 21, 2019
Predicting progression from mild cognitive impairment to Alzheimer's disease using longitudinal callosal atrophy.
Description: Lee, Sang Han, et al. Predicting progression from mild cognitive impairment to Alzheimer's disease using longitudinal callosal atrophy. ''Alzheimers Dement (Amst)''. 2016; '''2''': 68-74
Updated: Sep 21, 2019
Accurate Learning with Few Atlases (ALFA): an algorithm for MRI neonatal brain extraction and comparison with 11 publicly available methods.
Description: Serag, Ahmed, et al. Accurate Learning with Few Atlases (ALFA): an algorithm for MRI neonatal brain extraction and comparison with 11 publicly available methods. ''Sci Rep''. 2016 Mar 24; '''6''': 23470
Updated: Sep 21, 2019
Middle Cerebellar Peduncle Width-A Novel MRI Biomarker for FXTAS?
Description: Shelton, Annie L, et al. Middle Cerebellar Peduncle Width-A Novel MRI Biomarker for FXTAS? ''Front Neurosci''. 2018; '''12''': 379
Updated: Sep 21, 2019