I am trying to run LesionToads on a T1 and T2 image on my Linux machine, but midway through during iteration1 (atlas alignment), I get this error:

Pb: X (0,0,0) -> X' (NaN,NaN,NaN)
transform: (NaN, NaN, NaN, NaN, NaN, NaN, NaN, NaN, NaN, NaN, NaN, NaN)
Exception in thread "Thread-3" java.lang.NullPointerException

Does anyone know what is wrong or how I can resolve this?

Thanks.

Please install the new version of LesionTOADS that is uploaded on the project page. After installing the TOADS-CRUISE package in mipav, install the Lesion-TOADS jar file. This should solve the problem.