TOADS-CRUISE Brain Segmentation Tools

The TOADS-CRUISE Brain Segmentation Tools are a collection of software plug-ins developed for the automatic segmentation of magnetic resonance brain images. The tools include multiple published algorithms developed at Johns Hopkins University. The SPECTRE algorithm performs brain extraction. The TOADS algorithm generates a topology-preserving tissue classification into cortical, subcortical, and cerebellar structures. The CRUISE algorithm produces inner, central, and outer cortical surfaces suitable for computing thickness and other geometric measures. Tools are also included for performing gyral labeling, lesion segmentation, thickness computation, surface visualization, and surface file conversion. All tools are released as plug-ins for the MIPAV software package and were developed using the Java Image Science Toolkit (both available on NITRC). They are therefore cross-platform and compatible with a wide variety of file formats.
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Specifications

License:Freeware
Diagnosis:Multiple Sclerosis
Domain:MR

Associations


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PubMed Mentions documentation

Tract-specific quantitative MRI better correlates with disability than conventional MRI in multiple sclerosis. posted by Nina Preuss on Dec 16, 2017

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PubMed Mentions documentation

Decreased microglial activation in MS patients treated with glatiramer acetate. posted by Nina Preuss on Dec 16, 2017

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PubMed Mentions documentation

System for integrated neuroimaging analysis and processing of structure. posted by Nina Preuss on Dec 16, 2017

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help forum

Lesion-TOADS for infratentorial MS lesions  posted by Afsaneh Shirani  on Sep 29, 2017

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open-discussion forum

RE: Atlas File - No Lesion - T1 Only posted by J Cuzzocreo on Jun 13, 2017

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open-discussion forum

RE: Atlas File - No Lesion - T1 Only posted by Hsiu-Wei Yang on Jun 13, 2017

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open-discussion forum

RE: Atlas File - No Lesion - T1 Only posted by J Cuzzocreo on Jun 6, 2017

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open-discussion forum

RE: Atlas File - No Lesion - T1 Only posted by Hsiu-Wei Yang on Jun 6, 2017

Forum Activity

open-discussion forum

RE: Atlas File - No Lesion - T1 Only posted by J Cuzzocreo on Jun 6, 2017

Forum Activity

open-discussion forum

RE: Atlas File - No Lesion - T1 Only posted by Hsiu-Wei Yang on Jun 6, 2017