Posted By: Olivier Commowick - Apr 2, 2019
Tool/Resource: Anima scripts
 
We are happy to announce a major update release of Anima scripts, a set of scripts that use Anima to perform complex preprocessing and core processing tasks on medical images. This repository is multi-platform (as long as python is available for your system). Atlasing scripts require an OAR scheduler. We hope this release will help your research in some way !

This new release contains the following updates:

- Requires Anima v3.2 or higher
- Brain extraction now includes an option to further refine the initial mask
- Atlas creation scripts are now python based
- Longitudinal atlas creation scripts
- Several bug corrections and updates to newer version of Anima
- MS segmentation preparation script (registration, denoising and bias correction for further analysis on a reference)

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