general > RE: Using a Custom Atlas in QuickNII
Nov 12, 2025  04:11 PM | Gergely Csucs
RE: Using a Custom Atlas in QuickNII

Fiji is correct, the volume itself is 16-bit, but it contained 8-bit values only, and the example encoder knew about this.


Now there's a PackWHSRatV4Demo.java file too.


Looked at the inia19 dataset, and generally it will work with QuickNII, as the most important restriction of QuickNII is the isotropic voxel size. Smaller hiccups are expected though: the label file format is different from ITK (so a modified parser is needed), and the orientation is LPI (axis order matches, but all axes are in the opposite direction compared to what QuickNII will display).

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TitleAuthorDate
Lindsey Ching Apr 30, 2025
Janine Reinert Nov 10, 2025
Gergely Csucs Nov 11, 2025
Janine Reinert Nov 12, 2025
RE: Using a Custom Atlas in QuickNII
Gergely Csucs Nov 12, 2025
Gergely Csucs Apr 30, 2025
Lindsey Ching Apr 30, 2025
Gergely Csucs May 16, 2025