help > FiberProcess failed
Oct 12, 2016  08:10 AM | Mathilde Guillaumot - NYU
FiberProcess failed
Hi,

I am trying to run DTIAtlasFiberAnalyzer within Slicer. And while following the steps indicated in the tutorial, I get the following error :

ModuleType: CommandLineModule
DTI Atlas Fiber Analyzer command line:
/home/mathilde/.config/NA-MIC/Extensions-24735/DTIAtlasFiberAnalyzer/lib/Slicer-4.5/cli-modules/DTIAtlasFiberAnalyzerLauncher --removeCleanFibers --removeNanFibers --fiberSamplingStep 1
DTI Atlas Fiber Analyzer standard output:
/home/mathilde/.config/NA-MIC/Extensions-24735/DTIAtlasFiberAnalyzer/lib/Slicer-4.5/cli-modules/../hidden-cli-modules/DTIAtlasFiberAnalyzer --removeCleanFibers --removeNanFibers --fiberSamplingStep 1
| Searching the softwares...
| Searching the software 'fiberprocess'...| Searching the software 'FiberPostProcess'...| Searching the software 'dtitractstat'...| Searching the software 'MergeStatWithFiber'...DONE
---- New Data ----
Compute fiberprocess...
Command Line : /home/mathilde/.config/NA-MIC/Extensions-24735/DTIProcess/lib/Slicer-4.5/cli-modules/fiberprocess --fiber_file /home/mathilde/data/3D_Slicer/Dataset/AdultAtlas/Genu.vtk --tensor_volume /home/mathilde/data/3D_Slicer/Dataset/DiffusionDataset-Reg/DTIdata_AffineRegAtlas.nrrd --displacement_field /home/mathilde/data/3D_Slicer/Dataset/DiffusionDataset-Reg/Deformation_DTIdataAffineToAtlas.nrrd --no_warp --fiber_output /home/mathilde/data/Fiber_Processing/DTIAtlasFiberAnalyzer/res/Cases/DWI dataset/DWI dataset_Genu.vtk --verbose --saveProperties
/home/mathilde/.config/NA-MIC/Extensions-24735/DTIProcess/lib/Slicer-4.5
/cli-modules/fiberprocess
[--returnparameterfile
]
[--processinformationaddress
] [--xml] [--echo]
[--noDataChange] [-v] [--voxelLabel
] [--voxelizeCountFibers] [-V
] [--indexSpace] [-R
] [-n] [-p] [-D
] [-H ]
[-T ] [-o
] [--inputFiberBundle
] [--] [--version]
[-h]
Fail during fiberprocess!
Compute FiberPostProcess...
Command Line : /home/mathilde/.config/NA-MIC/Extensions-24735/DTIAtlasFiberAnalyzer/lib/Slicer-4.5/cli-modules/FiberPostProcess --inputFiberFile /home/mathilde/data/Fiber_Processing/DTIAtlasFiberAnalyzer/res/Cases/DWI dataset/DWI dataset_Genu.vtk --outputFiberFile /home/mathilde/data/Fiber_Processing/DTIAtlasFiberAnalyzer/res/Cases/DWI dataset/DWI dataset_Genu_processed.vtk
done
Unable to open file: /home/mathilde/data/Fiber_Processing/DTIAtlasFiberAnalyzer/res/Cases/DWI dataset/DWI dataset_Genu.vtk
Qt has caught an exception thrown from an event handler. Throwing
exceptions from an event handler is not supported in Qt. You must
reimplement QApplication::notify() and catch all exceptions there.
terminate called after throwing an instance of 'std::out_of_range'
what(): vector::_M_range_check
Aborted (core dumped)
DTI Atlas Fiber Analyzer completed without errors

Any clues on where it might come from?
FiberProcess is working if I execute it separately in Slicer...

Mathilde

Threaded View

TitleAuthorDate
FiberProcess failed
Mathilde Guillaumot Oct 12, 2016
Juan Prieto Oct 12, 2016
Mathilde Guillaumot Oct 13, 2016
Juan Prieto Oct 26, 2016