open-discussion
open-discussion > RE: Problems with FDT-bedpostx
Oct 9, 2017 03:10 PM | Cheol Han
RE: Problems with FDT-bedpostx
Hi
I am sorry for the late reply (it was a long holiday in Korea)
I. rotating bvecs
You're in a wrong directory. In the directory you typed "fdt_rotate" does not contain the ecc log file.
What you should do is..
1. rotate bvec in the original directory
2. make a new folder "data"
3. copy the data.nii.gz (eddy corrected one.) into the data directory
4. copy the rotated bvecs and bvals into the data directory
5. copy the nodif_brain_mask into the data directory.
6. make sure all names are apppropriate (https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/F...)
ii. bedpostx
I think you did not perform dtifit...
please follow https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FDT/UserGuide
Best
Cheol
I am sorry for the late reply (it was a long holiday in Korea)
I. rotating bvecs
You're in a wrong directory. In the directory you typed "fdt_rotate" does not contain the ecc log file.
What you should do is..
1. rotate bvec in the original directory
2. make a new folder "data"
3. copy the data.nii.gz (eddy corrected one.) into the data directory
4. copy the rotated bvecs and bvals into the data directory
5. copy the nodif_brain_mask into the data directory.
6. make sure all names are apppropriate (https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/F...)
ii. bedpostx
I think you did not perform dtifit...
please follow https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FDT/UserGuide
Best
Cheol
Threaded View
| Title | Author | Date |
|---|---|---|
| Mir Jeong | Sep 18, 2017 | |
| Cheol Han | Sep 19, 2017 | |
| Mir Jeong | Sep 21, 2017 | |
| Cheol Han | Oct 9, 2017 | |
| Sulantha Sanjeewa | Sep 18, 2017 | |
