open-discussion
open-discussion > RE: Create XML file without running checking
Jan 3, 2018 11:01 PM | Rachel Steiner - University of Wisconsin - Madison
RE: Create XML file without running checking
Oops sorry I did not see that anyone had replied to your postings.
I’m glad you worked it out!
Rachel.
Originally posted by Rachel Steiner:
I’m glad you worked it out!
Rachel.
Originally posted by Rachel Steiner:
Hi Jian,
Load a representative raw dwi dataset from your study in the GUI, go to the protocol tab, click default protocol, then click “save as” to save the xml file somewhere before clicking “Run.” You can modify the default parameters right there in the GUI then save it again as the new modified xml without running the whole processing. Just click save rather Jan run protocol.
Alternatively, run a new dtiprep window to open up that default xml file younjust saved and manually modify using the GUI and then save as a different name somewhere safely to be used on the command line ... on the command line you will be pointing the -p to the absolute path where you’ve saved the modified xml. For example, /Home/safe/modified. xml
Did I understand your question correctly? Are you having an issue finding a save as button in the GUI window with your version of dtiprep?
Rachel
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[/color]Originally posted by Jian Zhang:
Load a representative raw dwi dataset from your study in the GUI, go to the protocol tab, click default protocol, then click “save as” to save the xml file somewhere before clicking “Run.” You can modify the default parameters right there in the GUI then save it again as the new modified xml without running the whole processing. Just click save rather Jan run protocol.
Alternatively, run a new dtiprep window to open up that default xml file younjust saved and manually modify using the GUI and then save as a different name somewhere safely to be used on the command line ... on the command line you will be pointing the -p to the absolute path where you’ve saved the modified xml. For example, /Home/safe/modified. xml
Did I understand your question correctly? Are you having an issue finding a save as button in the GUI window with your version of dtiprep?
Rachel
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[/color]Originally posted by Jian Zhang:
Hi experts,
We want to use the command line of DTIPrep to create XML file and then modify it, using the command as below:
Can you help us to point out how to create the default protocol XML file via command, without running the whole quality check, so that we can quickly modify XML file and then run the next command:
Thank you very much!
-Jian
We want to use the command line of DTIPrep to create XML file and then modify it, using the command as below:
DTIPrep -d -p SomeProto.xml -w
dwi.nrrd
But, only the GUI of DTIPrep will be launched, so we set the
command like this:DTIPrep -d -c -p SomeProto.xml -w
dwi.nrrd
We got the default protocol file, but this command run the whole
quality check procedure!Can you help us to point out how to create the default protocol XML file via command, without running the whole quality check, so that we can quickly modify XML file and then run the next command:
DTIPrep -c -p Modified.xml -w
dwi.nrrd
OR is there any way to combine these 2 steps together?Thank you very much!
-Jian
Threaded View
| Title | Author | Date |
|---|---|---|
| Jian Zhang | Dec 2, 2015 | |
| Rachel Steiner | Jan 3, 2018 | |
| Rachel Steiner | Jan 3, 2018 | |
| Michael Dayan | Dec 11, 2017 | |
| Martin Styner | Dec 11, 2017 | |
| Jian Zhang | Feb 12, 2018 | |
| Martin Styner | Mar 6, 2018 | |
| Jian Zhang | Mar 9, 2018 | |
| Martin Styner | Dec 4, 2015 | |
| Jian Zhang | Dec 5, 2015 | |
| Martin Styner | Dec 6, 2015 | |
| Jian Zhang | Dec 7, 2015 | |