questions
questions > RE: dcm2niix and slice timing
Feb 28, 2018 12:02 PM | Chris Rorden
RE: dcm2niix and slice timing
- Please make sure you are using the latest version (v1.0.20171215) -Michael Harms has done a lot to extend BIDS information for Siemens datasetshttps://github.com/rordenlab/dcm...
- I suspect the issue is that your data does not come from a Siemens MRI system running B11-E11 software. Slice timing information is not stored in the DICOM data for Philips and GE systems, and therefore you will need to get this information from the scanner console.
- If you are using a Siemens MRI system, there is an outside chance that the vital proprietary Siemens CSA header was stripped from the DICOM images by a PACS system (e.g. it was filtered through an anonymization protocol that removed this information). In this case, you may be able to get this information from getting your DICOM images direct from the scanner console.
Threaded View
Title | Author | Date |
---|---|---|
Amanda Rodrigue | Feb 27, 2018 | |
Chris Rorden | Mar 1, 2018 | |
Chris Rorden | Feb 28, 2018 | |
Amanda Rodrigue | Feb 28, 2018 | |