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dcm2nii

dcm2nii is a popular tool for converting images from the complicated formats used by scanner manufacturers (DICOM, PAR/REC) to the simple NIfTI format used by many scientific tools. dcm2nii works for all modalities (CT, MRI, PET, SPECT) and sequence types. Note: dcm2nii has traditionally been included with MRIcron downloads. This project describes the next generation version which we refer to as dcm2niix. Future releases will supersede the (legacy) dcm2nii distributed with MRIcron.

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Specifications

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Diagnosis:

Amyotrophic Lateral Sclerosis, Aphasia, Attention Deficit Disorder with Hyperactivity, Autistic Disorder, Brain Concussion, Brain Injuries, Alzheimer Disease, Depression, Dyslexia, Epilepsy, Multiple Sclerosis, Parkinson Disease, Schizophrenia, Stroke, Cocaine-Related Disorders, Tourette Syndrome

Domain:

CT, MR, PET/SPECT

Natural Language:

Operating System:

MacOS, Windows, OS Independent, Linux

Programming Language:

Supported Data Format:

Associations

is part of:

is installed on:

works well with:

Recent Activity - Documents

PubMed Mentions documentation

Altered cortical thickness and structural covariance networks in upper limb amputees: A graph theoretical analysis. posted by NITRC Moderator on Oct 21

PubMed Mentions documentation

Topographical Association Between Left Ventricular Strain and Brain Lesions in Patients With Acute Ischemic Stroke and Normal Cardiac Function. posted by NITRC Moderator on Oct 21

PubMed Mentions documentation

A small molecule 20C from Gastrodia elata inhibits alpha-synuclein aggregation and prevents progression of Parkinson's disease. posted by NITRC Moderator on Oct 21

PubMed Mentions documentation

The role of neurotransmitters in mediating the relationship between brain alterations and depressive symptoms in patients with inflammatory bowel disease. posted by NITRC Moderator on Oct 21

PubMed Mentions documentation

Towards data-driven biopsychosocial classification of non-specific chronic low back pain: a pilot study. posted by NITRC Moderator on Sep 16

PubMed Mentions documentation

A role for the fornix in temporal sequence memory. posted by NITRC Moderator on Aug 19

PubMed Mentions documentation

Predictive value of preoperative magnetic resonance imaging structural and diffusion indices for the results of trigeminal neuralgia microvascular decompression surgery. posted by NITRC Moderator on Aug 19

PubMed Mentions documentation

Age and sex differentially shape brain networks in Parkinson's disease. posted by NITRC Moderator on Aug 19

PubMed Mentions documentation

Expert-level pediatric brain tumor segmentation in a limited data scenario with stepwise transfer learning. posted by NITRC Moderator on Aug 19

PubMed Mentions documentation

Altered resting-state cerebellar-cerebral functional connectivity in patients with end-stage renal disease. posted by NITRC Moderator on Aug 19

Recent Activity - Trackers

Support tracker

Can I generate json files without accompanying nii files? posted by Chris Rorden on Apr 6, 2020

Support tracker

Can I generate json files without accompanying nii files? posted by James Waltz on Apr 6, 2020

dcm2niix and DICOM from Siemens Prisma VE11b posted by Chris Rorden on Jun 29, 2016

dcm2niix and DICOM from Siemens Prisma VE11b posted by Jonathan Brooks on Jun 28, 2016

Elimination of isotropic volume Philips data posted by Chris Rorden on Jul 15, 2015

Elimination of isotropic volume Philips data posted by Martijn Froeling on Jul 15, 2015

occasionally wrong bvec for DTI data Philips posted by Martijn Froeling on Jul 15, 2015

Recent Activity - Forums

questions forum

RE: Warning: Slice timing appears corrupted Siemens Skyra posted by jhs69 on Oct 2

questions forum

RE: Recommendations for Converting Composed Abdomen MR DICOM with Inconsistent Slice Spacing to NIfTI posted by Chris Rorden on Sep 29

questions forum

RE: Warning: Slice timing appears corrupted Siemens Skyra posted by Chris Rorden on Sep 29

questions forum

Warning: Slice timing appears corrupted Siemens Skyra posted by jhs69 on Sep 29

questions forum

Recommendations for Converting Composed Abdomen MR DICOM with Inconsistent Slice Spacing to NIfTI posted by cz239 on Sep 29

questions forum

RE: Warning message converting DICOM to NIFTI files posted by Chris Rorden on Sep 28

questions forum

RE: Warning message converting DICOM to NIFTI files posted by Suk Won CHOI on Sep 28

questions forum

RE: Warning message converting DICOM to NIFTI files posted by Chris Rorden on Sep 28

questions forum

RE: Warning message converting DICOM to NIFTI files posted by Suk Won CHOI on Sep 28

questions forum

RE: Warning message converting DICOM to NIFTI files posted by Suk Won CHOI on Sep 28

Recent Activity - Files

dcm2nii: dcm2nii (source code, please download MRIcroGL for compiled version) release

GitHub posted by Chris Rorden on Sep 21, 2016

Statistics more information

RRID: SCR_014099

Funding: NIH R01DC009571, NIH U01DC011739

Documents: 2

PubMed Mentions: 154

Forums: 812 messages in 1 forum

News Items: 0

Task Manager: 0 open / 0 total

Tracker: 0 open / 0 total

Total Downloads: 12381

Registered: Sep 24, 2014

Organization: University of South Carolina

Center: McCausland Center for Brain Imaging

Assessments more information

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