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dcm2nii

dcm2nii is a popular tool for converting images from the complicated formats used by scanner manufacturers (DICOM, PAR/REC) to the simple NIfTI format used by many scientific tools. dcm2nii works for all modalities (CT, MRI, PET, SPECT) and sequence types. Note: dcm2nii has traditionally been included with MRIcron downloads. This project describes the next generation version which we refer to as dcm2niix. Future releases will supersede the (legacy) dcm2nii distributed with MRIcron.

Specifications

License:

Diagnosis:

Amyotrophic Lateral Sclerosis, Aphasia, Attention Deficit Disorder with Hyperactivity, Brain Concussion, Brain Injuries, Alzheimer Disease, Depression, Epilepsy, Multiple Sclerosis, Schizophrenia, Stroke, Cocaine-Related Disorders

Domain:

CT, MR, PET/SPECT

Natural Language:

Operating System:

MacOS, Windows, OS Independent, Linux

Programming Language:

Supported Data Format:

Associations

is part of:

is installed on:

works well with:

Recent Activity - Documents

PubMed Mentions documentation

Automated Diagnosis of COVID-19 Using Deep Supervised Autoencoder With Multi-View Features From CT Images. posted by NITRC Moderator on Dec 17, 2022

PubMed Mentions documentation

The interindividual variability of multimodal brain connectivity maintains spatial heterogeneity and relates to tissue microstructure. posted by NITRC Moderator on Oct 22, 2022

PubMed Mentions documentation

Cortical and subcortical grey matter atrophy in Amyotrophic Lateral Sclerosis correlates with measures of disease accumulation independent of disease aggressiveness. posted by NITRC Moderator on Oct 22, 2022

PubMed Mentions documentation

Increased cortical-medulla functional connectivity is correlated with swallowing in dysphagia patients with subacute infratentorial stroke. posted by NITRC Moderator on Sep 10, 2022

PubMed Mentions documentation

Identification of cranial nerve ganglia using sectioned images and three-dimensional models of a cadaver. posted by NITRC Moderator on Aug 20, 2022

PubMed Mentions documentation

Meditation-induced effects on whole-brain structural and effective connectivity. posted by NITRC Moderator on Jul 16, 2022

PubMed Mentions documentation

Scalp HFO rates decrease after successful epilepsy surgery and are not impacted by the skull defect resulting from craniotomy. posted by NITRC Moderator on Feb 12, 2022

PubMed Mentions documentation

Revisiting brain rewiring and plasticity in children born without corpus callosum. posted by NITRC Moderator on Dec 18, 2021

PubMed Mentions documentation

Afraid of the dark: Light acutely suppresses activity in the human amygdala. posted by NITRC Moderator on Oct 16, 2021

PubMed Mentions documentation

Virtual Connectomic Datasets in Alzheimer's Disease and Aging Using Whole-Brain Network Dynamics Modelling. posted by NITRC Moderator on Oct 16, 2021

Recent Activity - Trackers

Support tracker

Can I generate json files without accompanying nii files? posted by Chris Rorden on Apr 6, 2020

Support tracker

Can I generate json files without accompanying nii files? posted by James Waltz on Apr 6, 2020

dcm2niix and DICOM from Siemens Prisma VE11b posted by Chris Rorden on Jun 29, 2016

dcm2niix and DICOM from Siemens Prisma VE11b posted by Jonathan Brooks on Jun 28, 2016

Elimination of isotropic volume Philips data posted by Chris Rorden on Jul 15, 2015

Elimination of isotropic volume Philips data posted by Martijn Froeling on Jul 15, 2015

occasionally wrong bvec for DTI data Philips posted by Martijn Froeling on Jul 15, 2015

Recent Activity - Forums

questions forum

RE: help with conversion of Siemens Vida Fit 3T data posted by Chris Rorden on Jan 17

questions forum

RE: help with conversion of Siemens Vida Fit 3T data posted by Chris Rorden on Jan 17

questions forum

RE: help with conversion of Siemens Vida Fit 3T data posted by Ben Moloney on Jan 16

questions forum

RE: No error shooting and No result posted by Chris Rorden on Jan 12

questions forum

RE: No error shooting and No result posted by aoooooooo on Jan 12

questions forum

RE: No error shooting and No result posted by Chris Rorden on Jan 11

questions forum

RE: No error shooting and No result posted by aoooooooo on Jan 11

questions forum

RE: No error shooting and No result posted by Chris Rorden on Jan 11

questions forum

RE: No error shooting and No result posted by aoooooooo on Jan 11

questions forum

RE: No error shooting and No result posted by Chris Rorden on Jan 10

Recent Activity - Files

dcm2nii: dcm2nii (source code, please download MRIcroGL for compiled version) release

GitHub posted by Chris Rorden on Sep 21, 2016

Statistics more information

RRID: SCR_014099

Funding: NIH R01DC009571, NIH U01DC011739

Documents: 2

PubMed Mentions: 128

Forums: 771 messages in 1 forum

News Items: 0

Task Manager: 0 open / 0 total

Tracker: 0 open / 0 total

Total Downloads: 12063

Registered: Sep 24, 2014

Organization: University of South Carolina

Center: McCausland Center for Brain Imaging

Assessments more information

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