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dcm2nii

dcm2nii is a popular tool for converting images from the complicated formats used by scanner manufacturers (DICOM, PAR/REC) to the simple NIfTI format used by many scientific tools. dcm2nii works for all modalities (CT, MRI, PET, SPECT) and sequence types. Note: dcm2nii has traditionally been included with MRIcron downloads. This project describes the next generation version which we refer to as dcm2niix. Future releases will supersede the (legacy) dcm2nii distributed with MRIcron.

Specifications

License:

Diagnosis:

Amyotrophic Lateral Sclerosis, Aphasia, Attention Deficit Disorder with Hyperactivity, Brain Concussion, Brain Injuries, Alzheimer Disease, Depression, Epilepsy, Multiple Sclerosis, Schizophrenia, Stroke, Cocaine-Related Disorders

Domain:

CT, MR, PET/SPECT

Natural Language:

English

Operating System:

MacOS, Windows, OS Independent, Linux

Programming Language:

C

Supported Data Format:

DICOM, NIfTI-1

Associations

is part of:

MRIcroGL

is installed on:

Neurodocker

works well with:

MRIcroS

Recent Activity - Documents

PubMed Mentions documentation

Comparison of brain connectomes by MRI and genomics and its implication in Alzheimer's disease. posted by NITRC Moderator on Mar 14

PubMed Mentions documentation

Applying the D50 disease progression model to gray and white matter pathology in amyotrophic lateral sclerosis. posted by NITRC Moderator on Feb 15

PubMed Mentions documentation

Comparison of quality control methods for automated diffusion tensor imaging analysis pipelines. posted by NITRC Moderator on Feb 15

PubMed Mentions documentation

Effects of gene mutation and disease progression on representative neural circuits in familial Alzheimer's disease. posted by NITRC Moderator on Feb 15

PubMed Mentions documentation

DPARSF: A MATLAB Toolbox for "Pipeline" Data Analysis of Resting-State fMRI. posted by NITRC Moderator on Nov 9, 2019

PubMed Mentions documentation

Global versus local processing: seeing the left side of the forest and the right side of the trees. posted by NITRC Moderator on Nov 9, 2019

PubMed Mentions documentation

Medial temporal lobe epilepsy is associated with neuronal fibre loss and paradoxical increase in structural connectivity of limbic structures. posted by NITRC Moderator on Nov 9, 2019

PubMed Mentions documentation

Voxel-wise analysis of diffusion tensor imaging for clinical outcome of cochlear implantation: retrospective study. posted by NITRC Moderator on Nov 9, 2019

PubMed Mentions documentation

Asymmetry of the structural brain connectome in healthy older adults. posted by NITRC Moderator on Nov 9, 2019

PubMed Mentions documentation

Acute effects of modafinil on brain resting state networks in young healthy subjects. posted by NITRC Moderator on Nov 9, 2019

Recent Activity - Trackers

dcm2niix and DICOM from Siemens Prisma VE11b posted by Chris Rorden on Jun 29, 2016

dcm2niix and DICOM from Siemens Prisma VE11b posted by Jonathan Brooks on Jun 28, 2016

Elimination of isotropic volume Philips data posted by Chris Rorden on Jul 15, 2015

Elimination of isotropic volume Philips data posted by Martijn Froeling on Jul 15, 2015

occasionally wrong bvec for DTI data Philips posted by Martijn Froeling on Jul 15, 2015

Recent Activity - Forums

questions forum

RE: Specifying a series number does not output nifti files, only json sidecars posted by Chris Rorden 6 hours ago

questions forum

Specifying a series number does not output nifti files, only json sidecars posted by Margaret Mahan 18 hours ago

questions forum

RE: slice acquisition order posted by Chris Rorden on Mar 19

questions forum

slice acquisition order posted by sr shn on Mar 19

questions forum

RE: Name output with subfolders names posted by Chris Rorden on Mar 18

questions forum

Name output with subfolders names posted by msignes on Mar 18

questions forum

RE: Exception value: dcm2nii is not present in your PATH environment. posted by Chris Rorden on Mar 16

questions forum

Exception value: dcm2nii is not present in your PATH environment. posted by Stephen Tsou on Mar 16

questions forum

RE: Visualization trouble .nii with Mricron posted by Chris Rorden on Feb 24

questions forum

RE: Visualization trouble .nii with Mricron posted by Luca Cuffaro on Feb 24

Recent Activity - Files

dcm2nii: dcm2nii (source code, please download MRIcroGL for compiled version) release

GitHub posted by Chris Rorden on Sep 21, 2016

Recent Activity - Wiki

MainPage posted by Chris Rorden on Feb 12

Statistics more information

RRID: SCR_014099

Funding: NIH R01DC009571, NIH U01DC011739

Documents: 81

Forums: 548 messages in 1 forum

Mailing Lists: 1

News Items: 0

Task Manager: 0 open / 0 total

Tracker: 2 open / 3 total

Total Downloads: 10000

Registered: Sep 24, 2014

Organization: University of South Carolina

Center: McCausland Center for Brain Imaging

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