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dcm2nii

dcm2nii is a popular tool for converting images from the complicated formats used by scanner manufacturers (DICOM, PAR/REC) to the simple NIfTI format used by many scientific tools. dcm2nii works for all modalities (CT, MRI, PET, SPECT) and sequence types. Note: dcm2nii has traditionally been included with MRIcron downloads. This project describes the next generation version which we refer to as dcm2niix. Future releases will supersede the (legacy) dcm2nii distributed with MRIcron.

Execution Options

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Specifications

License:

Diagnosis:

Amyotrophic Lateral Sclerosis, Aphasia, Attention Deficit Disorder with Hyperactivity, Autistic Disorder, Brain Concussion, Brain Injuries, Alzheimer Disease, Depression, Dyslexia, Epilepsy, Multiple Sclerosis, Parkinson Disease, Schizophrenia, Stroke, Cocaine-Related Disorders, Tourette Syndrome

Domain:

CT, MR, PET/SPECT

Natural Language:

Operating System:

MacOS, Windows, OS Independent, Linux

Programming Language:

Supported Data Format:

Associations

is part of:

is installed on:

works well with:

Recent Activity - Documents

PubMed Mentions documentation

Brain Volume Metric Analysis Is Correlated with Aging Changes and Sex Differences in Thai Older Adults. posted by NITRC Moderator on Apr 19

PubMed Mentions documentation

A multiomics dataset of paired CT image and plasma cell-free DNA end motif for patients with pulmonary nodules. posted by NITRC Moderator on Apr 19

PubMed Mentions documentation

Shape matters: unsupervised exploration of IDH-wildtype glioma imaging survival predictors. posted by NITRC Moderator on Mar 15

PubMed Mentions documentation

SpiDa-MRI: behavioral and (f)MRI data of adults with fear of spiders. posted by NITRC Moderator on Mar 15

PubMed Mentions documentation

Targeting and reprogramming microglial phagocytosis of neutrophils by ginsenoside Rg1 nanovesicles promotes stroke recovery. posted by NITRC Moderator on Mar 15

PubMed Mentions documentation

Circulating tumor DNA and radiological tumor volume identify patients at risk for relapse with resected, early-stage non-small-cell lung cancer. posted by NITRC Moderator on Feb 15

PubMed Mentions documentation

Multimodal deep learning improves recurrence risk prediction in pediatric low-grade gliomas. posted by NITRC Moderator on Feb 15

PubMed Mentions documentation

A foundation model for generalized brain MRI analysis. posted by NITRC Moderator on Jan 18

PubMed Mentions documentation

Altered Brain Structure in Hemifacial Spasm Patients: A Multimodal Brain Structure Study. posted by NITRC Moderator on Nov 16, 2024

PubMed Mentions documentation

Differentiation between high-grade gliomas and solitary brain metastases based on multidiffusion MRI model quantitative analysis. posted by NITRC Moderator on Nov 16, 2024

Recent Activity - Trackers

Inconsistent qform and sform offsets with 3d crop posted by Christopher Kovach on Nov 7, 2024

Support tracker

Can I generate json files without accompanying nii files? posted by Chris Rorden on Apr 6, 2020

Support tracker

Can I generate json files without accompanying nii files? posted by James Waltz on Apr 6, 2020

dcm2niix and DICOM from Siemens Prisma VE11b posted by Chris Rorden on Jun 29, 2016

dcm2niix and DICOM from Siemens Prisma VE11b posted by Jonathan Brooks on Jun 28, 2016

Elimination of isotropic volume Philips data posted by Chris Rorden on Jul 15, 2015

Elimination of isotropic volume Philips data posted by Martijn Froeling on Jul 15, 2015

occasionally wrong bvec for DTI data Philips posted by Martijn Froeling on Jul 15, 2015

Recent Activity - Forums

questions forum

RE: dcm2niix - Warning: Slice timing appears corrupted posted by Chris Rorden on Apr 15

questions forum

RE: dcm2niix - Warning: Slice timing appears corrupted posted by Sreelakshmi Shaji on Apr 15

questions forum

RE: dcm2niix - Warning: Slice timing appears corrupted posted by Chris Rorden on Apr 15

questions forum

dcm2niix - Warning: Slice timing appears corrupted posted by Sreelakshmi Shaji on Apr 15

questions forum

RE: dcm2niix: Error converting 4d slices to nifti posted by Chris Rorden on Apr 3

questions forum

RE: dcm2niix: Error converting 4d slices to nifti posted by zubiop1 on Apr 3

questions forum

RE: dcm2niix: Error converting 4d slices to nifti posted by Chris Rorden on Apr 3

questions forum

dcm2niix: Error converting 4d slices to nifti posted by zubiop1 on Apr 3

questions forum

RE: ArterialSpinLabelingType in output json file posted by Chris Rorden on Feb 10

questions forum

ArterialSpinLabelingType in output json file posted by Jason Smith on Feb 10

Recent Activity - Files

dcm2nii: dcm2nii (source code, please download MRIcroGL for compiled version) release

GitHub posted by Chris Rorden on Sep 21, 2016

Statistics more information

RRID: SCR_014099

Funding: NIH R01DC009571, NIH U01DC011739

Documents: 2

PubMed Mentions: 175

Forums: 881 messages in 1 forum

News Items: 0

Task Manager: 0 open / 0 total

Tracker: 0 open / 0 total

Total Downloads: 12941

Registered: Sep 24, 2014

Organization: University of South Carolina

Center: McCausland Center for Brain Imaging

Assessments more information

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