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questions > Incorrect splitting of sequence
Oct 5, 2019 04:10 PM | Ari Kahn
Incorrect splitting of sequence
I've been acquiring data on a Siemens Prisma scanner, and when
converting the resulting data, I'm finding that occasionally, it's
getting split in half (literally, the first file has the left 1/3
of the brain, and the second file has the right 2/3), with the
message 'Slices not stacked: coil varies'
The files themselves are titled xxx_cHEA;HEP.nii and xxx_c.nii
When I look at verbose output from dcm2niix, I see about half the dicoms list: coilCRC 1867007786
and the other half: coilCRC 0
So it seems like dcm2niix is picking up on some change halfway through the sequence, but not sure where to start with this.
Happy to provide more info.
Best,
Ari
The files themselves are titled xxx_cHEA;HEP.nii and xxx_c.nii
When I look at verbose output from dcm2niix, I see about half the dicoms list: coilCRC 1867007786
and the other half: coilCRC 0
So it seems like dcm2niix is picking up on some change halfway through the sequence, but not sure where to start with this.
Happy to provide more info.
Best,
Ari
Threaded View
Title | Author | Date |
---|---|---|
Ari Kahn | Oct 5, 2019 | |
Andrew Worth | Nov 24, 2020 | |
Chris Rorden | Oct 10, 2019 | |