sdm-help-list
sdm-help-list > Combining Contrasts with New Method
Jan 17, 2020 02:01 PM | Katherine McCurry
Combining Contrasts with New Method
Hello,
I've searched the forum and read previous advice on the steps to include two or more contrasts from the same set of subjects - through the "Combine Images" tool. However, I am not certain about a few details when using the new version. Specifically, if I have coordinate locations from two or more contrasts from the same set of subjects (or mostly overlapping subjects), it is my understanding that I should pre-process these contrasts separately (i.e., each having their own text file) and then use the combine images tool with the t-maps that are created.
1. When pre-processing, an upper and lower estimate are created. Should I combine the upper and lower estimates separately (e.g., Study1A_upper + Study1B_upper = Study1_combined_upper, etc.) or combine both upper and lower files from both contrasts?
2. After creating these combined files, am I correct to understand that I need to use the "Convert Images" step and indicate the degrees of freedom?
3. Finally, do I need to re-process this combined images along with the others I am including in the main analysis? Or can I edit my sdm_maps.txt and sdmpsi_params.xml in some way to have it recognize these combined files?
Thanks for all you do to provide this resource to us all!
Best,
Katie
I've searched the forum and read previous advice on the steps to include two or more contrasts from the same set of subjects - through the "Combine Images" tool. However, I am not certain about a few details when using the new version. Specifically, if I have coordinate locations from two or more contrasts from the same set of subjects (or mostly overlapping subjects), it is my understanding that I should pre-process these contrasts separately (i.e., each having their own text file) and then use the combine images tool with the t-maps that are created.
1. When pre-processing, an upper and lower estimate are created. Should I combine the upper and lower estimates separately (e.g., Study1A_upper + Study1B_upper = Study1_combined_upper, etc.) or combine both upper and lower files from both contrasts?
2. After creating these combined files, am I correct to understand that I need to use the "Convert Images" step and indicate the degrees of freedom?
3. Finally, do I need to re-process this combined images along with the others I am including in the main analysis? Or can I edit my sdm_maps.txt and sdmpsi_params.xml in some way to have it recognize these combined files?
Thanks for all you do to provide this resource to us all!
Best,
Katie
Threaded View
| Title | Author | Date |
|---|---|---|
| Katherine McCurry | Jan 17, 2020 | |
| Katherine McCurry | Mar 25, 2020 | |
| Anna Kasdan | Feb 26, 2020 | |
| Katherine McCurry | Feb 26, 2020 | |
| Joaquim Radua | Apr 4, 2020 | |
