open-discussion
open-discussion > RE: Error while opening MRIcron drawn lesion files in Tracvis as an ROI
Feb 14, 2022 02:02 PM | Chris Rorden
RE: Error while opening MRIcron drawn lesion files in Tracvis as an ROI
Sorry I did not see this, but it looks like the spatial dimensions
are different (182x218x182 vs 181x217x181). More problematically,
the tracvis image does not include any spatial orientation
information (e.g. the SForm). I suspect this is a bug with
TrackVis, and you want to contact that team.
You may want to reslice the drawing to match your target. This is usually a simple script like this one (I would suggest nearest neighbor interpolation for binary lesion maps):
https://github.com/rordenlab/spmScripts/blob/master/nii_reslice_target.m
However, these scripts will be confounded by the fact that the TrackVis spatial transform has not been set. You will want to sort that out first.
You may want to reslice the drawing to match your target. This is usually a simple script like this one (I would suggest nearest neighbor interpolation for binary lesion maps):
https://github.com/rordenlab/spmScripts/blob/master/nii_reslice_target.m
However, these scripts will be confounded by the fact that the TrackVis spatial transform has not been set. You will want to sort that out first.
Threaded View
| Title | Author | Date |
|---|---|---|
| PRABHAKAR AT | Aug 24, 2020 | |
| cui zhixia | Feb 14, 2022 | |
| PRABHAKAR AT | Feb 14, 2022 | |
| Roger Newman-Norlund | Feb 14, 2022 | |
| Chris Rorden | Feb 14, 2022 | |
| Chris Rorden | Feb 14, 2022 | |
