help > RE: 3D rendering of subcortical structures and overlaying statistical maps using surf ice
Apr 25, 2022  03:04 PM | Chris Rorden
RE: 3D rendering of subcortical structures and overlaying statistical maps using surf ice
The first issue here is that the files you provided are not valid gzip format files, which explains why Surfice, FSLeyes, MRIcroGL, etc can not read them. Specifically, they have the gzip header and lz77 data stream, but omit the gzip footer. So the first task is to uncompress these to simple .nii files (and optionally recompress them to proper .nii.gz files). 

You can then use Surfice's Advanced/ConvertVolxelwiseVolumeToMesh to turn your hippocampus mask into a triangulated mesh. You need to choose a reasonable intensity for your isosurface boundary. Finally, you can load you TFCE statistical map as an overlay.
Attachment: hippo.png

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TitleAuthorDate
Mantosh Patnaik Apr 20, 2022
Mantosh Patnaik Apr 28, 2022
RE: 3D rendering of subcortical structures and overlaying statistical maps using surf ice
Chris Rorden Apr 25, 2022
Mantosh Patnaik Apr 28, 2022
Chris Rorden Apr 28, 2022
Mantosh Patnaik Apr 25, 2022
Mantosh Patnaik Apr 25, 2022
Mantosh Patnaik Apr 22, 2022
Chris Rorden Apr 22, 2022
Chris Rorden Apr 20, 2022