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help > physical space to voxel space (i,j,k)
Oct 17, 2012 10:10 PM | Birkan Tunc
physical space to voxel space (i,j,k)
i was trying to figure out the transformation between physical
space to voxel space for tract output. In the documentation it
says, to transform a physical coordinate to voxel index you simply
do
floor(x / xVoxelDim)
floor(y / yVoxelDim)
floor(z / zVoxelDim)
However, I definetely need something more comprehensive since this transformation does not consider origin orientation etc. Let me give an example,
Assume we have 128x128x70 image with voxel dims 1.875, 1.875, 2.0 respectively.The physical coordinate of origin is -120, -132.110, -37.523 Image is in LPS order. I think camino use RAS order...
Here are some physical coordinates (x,y,z) of camino's output
-19.7166690826 -59.717010498 45.477432251
-5.78898382187 -3.82826209068 32.5960655212
As you see some of them negatives due to orientation of the origin. Then, what is the formula to get indices(i,j,k) of these coordinates?
floor(x / xVoxelDim)
floor(y / yVoxelDim)
floor(z / zVoxelDim)
However, I definetely need something more comprehensive since this transformation does not consider origin orientation etc. Let me give an example,
Assume we have 128x128x70 image with voxel dims 1.875, 1.875, 2.0 respectively.The physical coordinate of origin is -120, -132.110, -37.523 Image is in LPS order. I think camino use RAS order...
Here are some physical coordinates (x,y,z) of camino's output
-19.7166690826 -59.717010498 45.477432251
-5.78898382187 -3.82826209068 32.5960655212
As you see some of them negatives due to orientation of the origin. Then, what is the formula to get indices(i,j,k) of these coordinates?
Threaded View
| Title | Author | Date |
|---|---|---|
| Birkan Tunc | Oct 17, 2012 | |
| Philip Cook | Oct 17, 2012 | |
| Birkan Tunc | Oct 17, 2012 | |
| Philip Cook | Oct 17, 2012 | |
| Birkan Tunc | Oct 18, 2012 | |
| Philip Cook | Oct 18, 2012 | |
| Birkan Tunc | Oct 18, 2012 | |
| Philip Cook | Oct 18, 2012 | |
| Birkan Tunc | Oct 18, 2012 | |
