open-discussion > RE: Shared NIRS Data Format - SNIRF
Oct 22, 2012  04:10 PM | Mathieu Coursolle
RE: Shared NIRS Data Format - SNIRF
Hi,

Thanks for sharing this draft specification. Here are a few small (late) comments I'd like to share on the latest version.

Our new NIRS system should be released in a few months, and we made it very modular. The system can be made from any combination of up to 4 "blocks", each having the potential of having a different number of sources, detectors and wavelengths (as well as different wavelength values). 

That being said, I just wanted to make sure that the specification doesn't enforce the usage of all wavelengths available on the system for all measurements (I may be wrong, but I do believe it was the case for the Matlab based .nirs file format).

In the description of the "ml" structure, there is a note specifying that "source indices generally refer to the optode naming (probe positions)". I assume that it is the same for detectors?

In the optional variables, the "qform" variable specified a 4x4 matrix to align the NIRS coordinate system to other geometries. Would it be useful to have an additionnal variable that describes that geometry (ex: MNI, Talairach, anatomical, etc) ? I am thinking of something that may be similar to the NIfTI file format.

Also, are there any constraints in terms of endianness of the file, and/or type encoding of the different variables?

Thank you,

Mathieu Coursolle
Rogue Research Inc.

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David Boas Oct 19, 2012
David Boas Aug 1, 2013
Mathieu Coursolle Apr 2, 2013
Mathieu Coursolle Apr 15, 2013
David Boas Jul 31, 2013
David Boas Jul 31, 2013
David Boas Nov 20, 2012
Alex Cristia Nov 20, 2012
Alex Cristia Nov 5, 2012
David Boas Nov 16, 2012
Mathieu Coursolle Nov 16, 2012
Alessandro Torricelli Oct 25, 2012
Blaise Frederick Oct 26, 2012
David Boas Nov 5, 2012
Alessandro Torricelli Oct 25, 2012
RE: Shared NIRS Data Format - SNIRF
Mathieu Coursolle Oct 22, 2012
Blaise Frederick Oct 22, 2012
David Boas Nov 5, 2012
Mathieu Coursolle Nov 20, 2012