ANDA

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The ANDA analysis workflow quantifies various aspects of neuronal morphology from high-throughput in-vitro live-cell imaging screens. Using ANDA, neuronal cell counts, neurite lengths, and neurite attachment points can be automated from phase-constrast neuronal differentiation images. This open-source tool is easy to use and can automatically process neuronal cell time-course measurements. ANDA can analyse images from rat, chicken and human in vitro nuronal models.

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Specifications

License:

MIT

Domain:

Optical Imaging

Other Keywords:

cellbodies, differentiation, fiji, neurites, toxicology

Recent Activity - Documents

Application Publications documentation

Paracetamol perturbs neuronal arborization and disrupts the cytoskeletal proteins SPTBN1 and TUBB3 in both human and chicken in vitro models. posted by Ragnhild Eskeland on Apr 25, 2023

Recent Activity - Files

GitHub_Releases: Time-coure phase contrast of chicken cerebellar granule neurons (CGNs) neuronal differentiation (4 replicates E F G H) and ANDA analysis output files. License CC BY 4.0. release

cgn_ctrl_summary_cells.csv posted by Ragnhild Eskeland on Jul 10, 2023

GitHub_Releases: Time-coure phase contrast of chicken cerebellar granule neurons (CGNs) neuronal differentiation (4 replicates E F G H) and ANDA analysis output files. License CC BY 4.0. release

cgn_ctrl_summary_neurites.csv posted by Ragnhild Eskeland on Jul 10, 2023

GitHub_Releases: Time-coure phase contrast of chicken cerebellar granule neurons (CGNs) neuronal differentiation (4 replicates E F G H) and ANDA analysis output files. License CC BY 4.0. release

cgn_ctrl_summary_branching.csv posted by Ragnhild Eskeland on Jul 10, 2023

GitHub_Releases: Time-coure phase contrast of chicken cerebellar granule neurons (CGNs) neuronal differentiation (4 replicates E F G H) and ANDA analysis output files. License CC BY 4.0. release

38CGN_H1_1_2018y09m26d_02h00m.tif posted by Ragnhild Eskeland on Jul 10, 2023

GitHub_Releases: Time-coure phase contrast of chicken cerebellar granule neurons (CGNs) neuronal differentiation (4 replicates E F G H) and ANDA analysis output files. License CC BY 4.0. release

40CGN_H1_1_2018y09m27d_02h00m.tif posted by Ragnhild Eskeland on Jul 10, 2023

GitHub_Releases: Time-coure phase contrast of chicken cerebellar granule neurons (CGNs) neuronal differentiation (4 replicates E F G H) and ANDA analysis output files. License CC BY 4.0. release

41CGN_H1_1_2018y09m27d_14h00m.tif posted by Ragnhild Eskeland on Jul 10, 2023

GitHub_Releases: Time-coure phase contrast of chicken cerebellar granule neurons (CGNs) neuronal differentiation (4 replicates E F G H) and ANDA analysis output files. License CC BY 4.0. release

42CGN_H1_1_2018y09m28d_02h00m.tif posted by Ragnhild Eskeland on Jul 10, 2023

GitHub_Releases: Time-coure phase contrast of chicken cerebellar granule neurons (CGNs) neuronal differentiation (4 replicates E F G H) and ANDA analysis output files. License CC BY 4.0. release

44CGN_H1_1_2018y09m29d_02h00m.tif posted by Ragnhild Eskeland on Jul 10, 2023

GitHub_Releases: Time-coure phase contrast of chicken cerebellar granule neurons (CGNs) neuronal differentiation (4 replicates E F G H) and ANDA analysis output files. License CC BY 4.0. release

45CGN_H1_1_2018y09m29d_14h00m.tif posted by Ragnhild Eskeland on Jul 10, 2023

GitHub_Releases: Time-coure phase contrast of chicken cerebellar granule neurons (CGNs) neuronal differentiation (4 replicates E F G H) and ANDA analysis output files. License CC BY 4.0. release

46CGN_H1_1_2018y09m30d_02h00m.tif posted by Ragnhild Eskeland on Jul 10, 2023

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Funding:

Supported by PharmaTox Strategic Research Initiative, Mathematical and Natural Science Faculty, University of Oslo, and partly supported by the Research Council of Norway through its Centres of Excellence funding scheme [262652]. We thank Institute of Basic Medical Sciences, Faculty of Medicine, University of Oslo for funding of (HAW).

Documents: 1

PubMed Mentions: 0

News Items: 0

Task Manager: 0 open / 0 total

Total Downloads: 2144

Registered: Apr 25, 2023

Organization: University of Oslo

Center: Centre for Cancer Cell Reprogramming and PharmaTox

Application Publications: 1