Brede Toolbox

The Brede Toolbox is a package for neuroinformatics and neuroimaging analysis mostly programmed in Matlab with a few additional programs in Python and Perl. It allows coordinate-based meta-analysis and visualization, neuroimaging analysis of voxel or regional data. Among the algorithms implemented are kernel density estimation (for coordinate-based meta-analysis), independent component analysis, non-negative matrix factorization, k-means clustering, singular value decomposition, partial correlation analysis with permutation testing and partial canonical correlation analysis. Visualization of coordinate, surfaces and volumes are possible in 2D and 3D.
Generation of HTML for results are possible and algorithms can be accessed from the command line or via a flexible graphical interface. With the Brede Toolbox comes the Brede Database with a small coordinate database from published neuroimaging studies, and ontologies for, e.g., brain function and brain regions.

Specifications

Category:Ontology, Database Application, Independent Component Analysis, Principal Component Analysis, Regression
License:Brede Toolbox License
Development Status:5 - Production/Stable/Mature
Domain:MR
Environment:Console (Text Based), Win32 (MS Windows), X11 Applications
Intended Audience:Developers, End Users
Natural Language:English
Operating System:OS Independent
Programming Language:MATLAB
Supported Data Format:ANALYZE

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Welcome to Open-Discussion posted by Christian Haselgrove on Jun 20, 2009

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Welcome to Help posted by Christian Haselgrove on Jun 20, 2009