WFU_Pipeline

The WFU SPM5 Pipeline is a fully automated method for the processing of fMRI data using SPM. It is fully automated from the point of data acquisition at the MRI scanner. It incorporates tools for automated data transfer, archiving, real-time SPM5 batch script generation with distributed grid processing, automated error-recovery procedures, full data-provenance, email notifications, optional conversion back to DICOM (Digital Imaging and Communications in Medicine), and picture archiving and communications systems (PACS) insertion. The architecture allows for an infinite number of easily definable analyses that are fully automated from the point of acquisition.
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Specifications

Category:Workflow
License:WFU ANSIR License
Development Status:5 - Production/Stable/Mature
Diagnosis:Schizophrenia
Domain:MR
Environment:Console (Text Based), X11 Applications
Natural Language:English
Operating System:Linux
Programming Language:C++, MATLAB, Unix Shell
Supported Data Format:ANALYZE, DICOM, NIfTI-1

Recent Activity

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Document Activity

PubMed Mentions documentation

Unified framework for development, deployment and robust testing of neuroimaging algorithms. posted by Nina Preuss on Dec 16, 2017

Document Activity

PubMed Mentions documentation

Fully automated processing of fMRI data in SPM: from MRI scanner to PACS. posted by Nina Preuss on Dec 16, 2017

Document Activity

PubMed Mentions documentation

Effect of schizophrenia risk-associated alleles in SREB2 (GPR85) on functional MRI phenotypes in healthy volunteers. posted by Nina Preuss on Dec 16, 2017

Document Activity

PubMed Mentions documentation

ICA-fNORM: Spatial Normalization of fMRI Data Using Intrinsic Group-ICA Networks. posted by Nina Preuss on Dec 16, 2017

Document Activity

PubMed Mentions documentation

Exercise challenge in Gulf War Illness reveals two subgroups with altered brain structure and function. posted by Nina Preuss on Dec 16, 2017

Document Activity

PubMed Mentions documentation

Optimizing complexity measures for FMRI data: algorithm, artifact, and sensitivity. posted by Nina Preuss on Dec 16, 2017

Document Activity

PubMed Mentions documentation

A multi-site resting state fMRI study on the amplitude of low frequency fluctuations in schizophrenia. posted by Nina Preuss on Dec 16, 2017

Document Activity

PubMed Mentions documentation

Brain imaging predictors and the international study to predict optimized treatment for depression: study protocol for a randomized controlled trial. posted by Nina Preuss on Dec 16, 2017

Document Activity

PubMed Mentions documentation

Association of frontal gray matter volume and cerebral perfusion in heroin addiction: a multimodal neuroimaging study. posted by Nina Preuss on Dec 16, 2017

News Activity

Tool & Resource news

WFU_Pipeline 1.0 Release posted by Benjamin Wagner on Feb 13, 2009