PubMed Mentions
The links below are to publications on PubMed referring to BrainIAK (Brain Imaging Analysis Kit). This list is gathered weekly from PubMed automatically and was last updated on January 10, 2026.
| Publication/References | |
| A probabilistic approach to discovering dynamic full-brain functional connectivity patterns. Description: Manning, Jeremy R, et al. A probabilistic approach to discovering dynamic full-brain functional connectivity patterns. ''Neuroimage''. 2018 Oct 15; '''180''' (Pt A):243-252 | |
| Mapping between fMRI responses to movies and their natural language annotations. Description: Vodrahalli, Kiran, et al. Mapping between fMRI responses to movies and their natural language annotations. ''Neuroimage''. 2018 Oct 15; '''180''' (Pt A):223-231 | |
| Feasibility of topological data analysis for event-related fMRI. Description: Ellis, Cameron T, et al. Feasibility of topological data analysis for event-related fMRI. ''Netw Neurosci''. 2019; '''3''' (3):695-706 | |
| Measuring shared responses across subjects using intersubject correlation. Description: Nastase, Samuel A, et al. Measuring shared responses across subjects using intersubject correlation. ''Soc Cogn Affect Neurosci''. 2019 Aug 7; '''14''' (6):667-685 | |
| BrainIAK tutorials: User-friendly learning materials for advanced fMRI analysis. Description: Kumar, Manoj, et al. BrainIAK tutorials: User-friendly learning materials for advanced fMRI analysis. ''PLoS Comput Biol''. 2020 Jan; '''16''' (1):e1007549 | |
| Facilitating open-science with realistic fMRI simulation: validation and application. Description: Ellis, Cameron T, et al. Facilitating open-science with realistic fMRI simulation: validation and application. ''PeerJ''. 2020; '''8''': e8564 | |
| Tools of the Trade Multivoxel pattern analysis in fMRI: a practical introduction for social and affective neuroscientists. Description: Weaverdyck, Miriam E, et al. Tools of the Trade Multivoxel pattern analysis in fMRI: a practical introduction for social and affective neuroscientists. ''Soc Cogn Affect Neurosci''. 2020 Jun 23; '''15''' (4):487-509 | |
| Incorporating structured assumptions with probabilistic graphical models in fMRI data analysis. Description: Cai, Ming Bo, et al. Incorporating structured assumptions with probabilistic graphical models in fMRI data analysis. ''Neuropsychologia''. 2020 Jul; '''144''': 107500 | |
| Leveraging shared connectivity to aggregate heterogeneous datasets into a common response space. Description: Nastase, Samuel A, et al. Leveraging shared connectivity to aggregate heterogeneous datasets into a common response space. ''Neuroimage''. 2020 Aug 15; '''217''': 116865 | |
| The Amsterdam Open MRI Collection, a set of multimodal MRI datasets for individual difference analyses. Description: Snoek, Lukas, et al. The Amsterdam Open MRI Collection, a set of multimodal MRI datasets for individual difference analyses. ''Sci Data''. 2021 Mar 19; '''8''' (1):85 | |
| Neural alignment predicts learning outcomes in students taking an introduction to computer science course. Description: Meshulam, Meir, et al. Neural alignment predicts learning outcomes in students taking an introduction to computer science course. ''Nat Commun''. 2021 Mar 26; '''12''' (1):1922 | |
| The "Narratives" fMRI dataset for evaluating models of naturalistic language comprehension. Description: Nastase, Samuel A, et al. The "Narratives" fMRI dataset for evaluating models of naturalistic language comprehension. ''Sci Data''. 2021 Sep 28; '''8''' (1):250 | |
| High-level cognition during story listening is reflected in high-order dynamic correlations in neural activity patterns. Description: Owen, Lucy L W, et al. High-level cognition during story listening is reflected in high-order dynamic correlations in neural activity patterns. ''Nat Commun''. 2021 Sep 30; '''12''' (1):5728 | |
| Real-time neurofeedback to alter interpretations of a naturalistic narrative. Description: Mennen, Anne C, et al. Real-time neurofeedback to alter interpretations of a naturalistic narrative. ''Neuroimage Rep''. 2022 Sep; '''2''' (3): | |
| A machine learning approach towards the differentiation between interoceptive and exteroceptive attention. Description: Zuo, Zoey X, et al. A machine learning approach towards the differentiation between interoceptive and exteroceptive attention. ''Eur J Neurosci''. 2023 Jul; '''58''' (2):2523-2546 | |
| Perception and memory retrieval states are reflected in distributed patterns of background functional connectivity. Description: Li, Y Peeta, et al. Perception and memory retrieval states are reflected in distributed patterns of background functional connectivity. ''Neuroimage''. 2023 Aug 1; '''276''': 120221 | |
| Synchronized affect in shared experiences strengthens social connection. Description: Cheong, Jin Hyun, et al. Synchronized affect in shared experiences strengthens social connection. ''Commun Biol''. 2023 Oct 28; '''6''' (1):1099 | |
| High-level cognition is supported by information-rich but compressible brain activity patterns. Description: Owen, Lucy L W, et al. High-level cognition is supported by information-rich but compressible brain activity patterns. ''Proc Natl Acad Sci U S A''. 2024 Aug 27; '''121''' (35):e2400082121 | |
| The medial and lateral orbitofrontal cortex jointly represent the cognitive map of task space. Description: Tan, Liwei, et al. The medial and lateral orbitofrontal cortex jointly represent the cognitive map of task space. ''Commun Biol''. 2025 Feb 3; '''8''' (1):163 | |
| Multivariate Pattern Analysis of fMRI Reveals Striato-Cortical Network Changes in Myoclonus-Dystonia. Description: Marapin, Ramesh S, et al. Multivariate Pattern Analysis of fMRI Reveals Striato-Cortical Network Changes in Myoclonus-Dystonia. ''Eur J Neurol''. 2025 Apr; '''32''' (4):e70085 | |
| Neural dynamics of spontaneous memory recall and future thinking in the continuous flow of thoughts. Description: Su, Haowen, et al. Neural dynamics of spontaneous memory recall and future thinking in the continuous flow of thoughts. ''Nat Commun''. 2025 Jul 11; '''16''' (1):6433 | |
| Effects of progressive aerobic training on neural synchrony and functional connectivity in internet gaming disorder: a randomized controlled fMRI study. Description: Li, Qinxuan, et al. Effects of progressive aerobic training on neural synchrony and functional connectivity in internet gaming disorder: a randomized controlled fMRI study. ''BMC Psychiatry''. 2025 Oct 14; '''25''' (1):986 |