NITRC: Mindboggle: open source software for analyzing the shapes of brain structures from human MRI data: PubMed Mentions: Display Document

PubMed Mentions

The links below are to publications on PubMed referring to Mindboggle: open source software for analyzing the shapes of brain structures from human MRI data. This list is gathered weekly from PubMed automatically and was last updated on March 7, 2026.

Publication/References
Mindboggle: a scatterbrained approach to automate brain labeling. Description: Klein, Arno, et al. Mindboggle: a scatterbrained approach to automate brain labeling. ''Neuroimage''. 2005 Jan 15; '''24''' (2):261-80
Mindboggle: automated brain labeling with multiple atlases. Description: Klein, Arno, et al. Mindboggle: automated brain labeling with multiple atlases. ''BMC Med Imaging''. 2005 Oct 5; '''5''': 7
Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. Description: Klein, Arno, et al. Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. ''Neuroimage''. 2009 Jul 1; '''46''' (3):786-802
Automatic morphometry in Alzheimer's disease and mild cognitive impairment. Description: Heckemann, Rolf A, et al. Automatic morphometry in Alzheimer's disease and mild cognitive impairment. ''Neuroimage''. 2011 Jun 15; '''56''' (4):2024-37
Automated extraction of nested sulcus features from human brain MRI data. Description: Bao, Forrest Sheng, et al. Automated extraction of nested sulcus features from human brain MRI data. ''Conf Proc IEEE Eng Med Biol Soc''. 2012; '''2012''': 4429-33
Automated parcellation of the brain surface generated from magnetic resonance images. Description: Li, Wen, et al. Automated parcellation of the brain surface generated from magnetic resonance images. ''Front Neuroinform''. 2013; '''7''': 23
Instrumentation bias in the use and evaluation of scientific software: recommendations for reproducible practices in the computational sciences. Description: Tustison, Nicholas J, et al. Instrumentation bias in the use and evaluation of scientific software: recommendations for reproducible practices in the computational sciences. ''Front Neurosci''. 2013; '''7''': 162
An evaluation of volume-based morphometry for prediction of mild cognitive impairment and Alzheimer's disease. Description: Schmitter, Daniel, et al. An evaluation of volume-based morphometry for prediction of mild cognitive impairment and Alzheimer's disease. ''Neuroimage Clin''. 2015; '''7''': 7-17
MRBrainS Challenge: Online Evaluation Framework for Brain Image Segmentation in 3T MRI Scans. Description: Mendrik, Adrienne M, et al. MRBrainS Challenge: Online Evaluation Framework for Brain Image Segmentation in 3T MRI Scans. ''Comput Intell Neurosci''. 2015; '''2015''': 813696
Predicting the laterality of temporal lobe epilepsy from PET, MRI, and DTI: A multimodal study. Description: Pustina, Dorian, et al. Predicting the laterality of temporal lobe epilepsy from PET, MRI, and DTI: A multimodal study. ''Neuroimage Clin''. 2015; '''9''': 20-31
Age- and sex-related variations in the brain white matter fractal dimension throughout adulthood: an MRI study. Description: Farahibozorg, S, et al. Age- and sex-related variations in the brain white matter fractal dimension throughout adulthood: an MRI study. ''Clin Neuroradiol''. 2015 Mar; '''25''' (1):19-32
Multi-contrast multi-scale surface registration for improved alignment of cortical areas. Description: Tardif, Christine Lucas, et al. Multi-contrast multi-scale surface registration for improved alignment of cortical areas. ''Neuroimage''. 2015 May 1; '''111''': 107-22
Multimodal neuroimaging computing: the workflows, methods, and platforms. Description: Liu, Sidong, et al. Multimodal neuroimaging computing: the workflows, methods, and platforms. ''Brain Inform''. 2015 Sep; '''2''' (3):181-195
Fast and robust segmentation of the striatum using deep convolutional neural networks. Description: Choi, Hongyoon, et al. Fast and robust segmentation of the striatum using deep convolutional neural networks. ''J Neurosci Methods''. 2016 Dec 1; '''274''': 146-153
Mindboggling morphometry of human brains. Description: Klein, Arno, et al. Mindboggling morphometry of human brains. ''PLoS Comput Biol''. 2017 Feb; '''13''' (2):e1005350
Longitudinal decline in speech production in Parkinson's disease spectrum disorders. Description: Ash, Sharon, et al. Longitudinal decline in speech production in Parkinson's disease spectrum disorders. ''Brain Lang''. 2017 Aug; '''171''': 42-51
Altered insula-default mode network connectivity in fibromyalgia: a resting-state magnetoencephalographic study. Description: Hsiao, Fu-Jung, et al. Altered insula-default mode network connectivity in fibromyalgia: a resting-state magnetoencephalographic study. ''J Headache Pain''. 2017 Aug 23; '''18''' (1):89
Behavioral and neurophysiological abnormalities during cued continuous performance tasks in patients with mild traumatic brain injury. Description: Zhao, Weixiang, et al. Behavioral and neurophysiological abnormalities during cued continuous performance tasks in patients with mild traumatic brain injury. ''Brain Behav''. 2018 May; '''8''' (5):e00966
Image Segmentation Based on Relative Motion and Relative Disparity Cues in Topographically Organized Areas of Human Visual Cortex. Description: Kohler, Peter J, et al. Image Segmentation Based on Relative Motion and Relative Disparity Cues in Topographically Organized Areas of Human Visual Cortex. ''Sci Rep''. 2019 Jun 26; '''9''' (1):9308
fMRI data of mixed gambles from the Neuroimaging Analysis Replication and Prediction Study. Description: Botvinik-Nezer, Rotem, et al. fMRI data of mixed gambles from the Neuroimaging Analysis Replication and Prediction Study. ''Sci Data''. 2019 Jul 1; '''6''' (1):106
Brain age prediction: Cortical and subcortical shape covariation in the developing human brain. Description: Zhao, Yihong, et al. Brain age prediction: Cortical and subcortical shape covariation in the developing human brain. ''Neuroimage''. 2019 Nov 15; '''202''': 116149
Modified connectivity of vulnerable brain nodes in multiple sclerosis, their impact on cognition and their discriminative value. Description: Solana, Elisabeth, et al. Modified connectivity of vulnerable brain nodes in multiple sclerosis, their impact on cognition and their discriminative value. ''Sci Rep''. 2019 Dec 27; '''9''' (1):20172
Impact of Cognitive Reserve and Structural Connectivity on Cognitive Performance in Multiple Sclerosis. Description: Lopez-Soley, Elisabet, et al. Impact of Cognitive Reserve and Structural Connectivity on Cognitive Performance in Multiple Sclerosis. ''Front Neurol''. 2020; '''11''': 581700
Anterolateral entorhinal cortex thickness as a new biomarker for early detection of Alzheimer's disease. Description: Holbrook, Andrew J, et al. Anterolateral entorhinal cortex thickness as a new biomarker for early detection of Alzheimer's disease. ''Alzheimers Dement (Amst)''. 2020; '''12''' (1):e12068
Electroencephalographic and Neuroimaging Asymmetry Correlation in Patients with Attention-Deficit Hyperactivity Disorder. Description: Longarzo, M, et al. Electroencephalographic and Neuroimaging Asymmetry Correlation in Patients with Attention-Deficit Hyperactivity Disorder. ''Neural Plast''. 2020; '''2020''': 4838291
Subjective cognitive decline detected by the oscillatory connectivity in the default mode network: a magnetoencephalographic study. Description: Cheng, Chia-Hsiung, et al. Subjective cognitive decline detected by the oscillatory connectivity in the default mode network: a magnetoencephalographic study. ''Aging (Albany NY)''. 2020 Feb 25; '''12''' (4):3911-3925
Prefrontal reinstatement of contextual task demand is predicted by separable hippocampal patterns. Description: Jiang, Jiefeng, et al. Prefrontal reinstatement of contextual task demand is predicted by separable hippocampal patterns. ''Nat Commun''. 2020 Apr 28; '''11''' (1):2053
Reliable estimation of membrane curvature for cryo-electron tomography. Description: Salfer, Maria, et al. Reliable estimation of membrane curvature for cryo-electron tomography. ''PLoS Comput Biol''. 2020 Aug; '''16''' (8):e1007962
The impact of cancer and chemotherapy during pregnancy on child neurodevelopment: A multimodal neuroimaging analysis. Description: Blommaert, J, et al. The impact of cancer and chemotherapy during pregnancy on child neurodevelopment: A multimodal neuroimaging analysis. ''EClinicalMedicine''. 2020 Nov; '''28''': 100598
An fMRI dataset in response to "The Grand Budapest Hotel", a socially-rich, naturalistic movie. Description: Visconti di Oleggio Castello, Matteo, et al. An fMRI dataset in response to "The Grand Budapest Hotel", a socially-rich, naturalistic movie. ''Sci Data''. 2020 Nov 11; '''7''' (1):383
Individual pain sensitivity is associated with resting-state cortical activities in healthy individuals but not in patients with migraine: a magnetoencephalography study. Description: Hsiao, Fu-Jung, et al. Individual pain sensitivity is associated with resting-state cortical activities in healthy individuals but not in patients with migraine: a magnetoencephalography study. ''J Headache Pain''. 2020 Nov 16; '''21''' (1):133
Daily Morning Blue Light Therapy for Post-mTBI Sleep Disruption: Effects on Brain Structure and Function. Description: Raikes, Adam C, et al. Daily Morning Blue Light Therapy for Post-mTBI Sleep Disruption: Effects on Brain Structure and Function. ''Front Neurol''. 2021; '''12''': 625431
DeepNavNet: Automated Landmark Localization for Neuronavigation. Description: Edwards, Christine A, et al. DeepNavNet: Automated Landmark Localization for Neuronavigation. ''Front Neurosci''. 2021; '''15''': 670287
Free-Living Physical Activity Measured With a Wearable Device Is Associated With Larger Hippocampus Volume and Greater Functional Connectivity in Healthy Older Adults: An Observational, Cross-Sectional Study in Northern Portugal. Description: Domingos, Celia, et al. Free-Living Physical Activity Measured With a Wearable Device Is Associated With Larger Hippocampus Volume and Greater Functional Connectivity in Healthy Older Adults: An Observational, Cross-Sectional Study in Northern Portugal. ''Front Aging Neurosci''. 2021; '''13''': 729060
Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction. Description: Demange, Perline A, et al. Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction. ''Nat Genet''. 2021 Jan; '''53''' (1):35-44
Allocentric representation in the human amygdala and ventral visual stream. Description: Evensmoen, Hallvard Roe, et al. Allocentric representation in the human amygdala and ventral visual stream. ''Cell Rep''. 2021 Jan 19; '''34''' (3):108658
Application of an Adaptive, Digital, Game-Based Approach for Cognitive Assessment in Multiple Sclerosis: Observational Study. Description: Hsu, Wan-Yu, et al. Application of an Adaptive, Digital, Game-Based Approach for Cognitive Assessment in Multiple Sclerosis: Observational Study. ''J Med Internet Res''. 2021 Jan 20; '''23''' (1):e24356
Emotion regulation in emerging adults with major depressive disorder and frequent cannabis use. Description: Nichols, Emily S, et al. Emotion regulation in emerging adults with major depressive disorder and frequent cannabis use. ''Neuroimage Clin''. 2021 Jan 26; '''30''': 102575
Difference in default mode network subsystems in autism across childhood and adolescence. Description: Bathelt, Joe, et al. Difference in default mode network subsystems in autism across childhood and adolescence. ''Autism''. 2021 Feb; '''25''' (2):556-565
Is it time to switch your T1W sequence? Assessing the impact of prospective motion correction on the reliability and quality of structural imaging. Description: Ai, Lei, et al. Is it time to switch your T1W sequence? Assessing the impact of prospective motion correction on the reliability and quality of structural imaging. ''Neuroimage''. 2021 Feb 1; '''226''': 117585
Patch-wise brain age longitudinal reliability. Description: Beheshti, Iman, et al. Patch-wise brain age longitudinal reliability. ''Hum Brain Mapp''. 2021 Feb 15; '''42''' (3):690-698
Dynamics of fMRI patterns reflect sub-second activation sequences and reveal replay in human visual cortex. Description: Wittkuhn, Lennart, et al. Dynamics of fMRI patterns reflect sub-second activation sequences and reveal replay in human visual cortex. ''Nat Commun''. 2021 Mar 19; '''12''' (1):1795
The Amsterdam Open MRI Collection, a set of multimodal MRI datasets for individual difference analyses. Description: Snoek, Lukas, et al. The Amsterdam Open MRI Collection, a set of multimodal MRI datasets for individual difference analyses. ''Sci Data''. 2021 Mar 19; '''8''' (1):85
Amygdala size varies with stress perception. Description: Caetano, Ines, et al. Amygdala size varies with stress perception. ''Neurobiol Stress''. 2021 May; '''14''': 100334
Differential dopaminergic modulation of spontaneous cortico-subthalamic activity in Parkinson's disease. Description: Sharma, Abhinav, et al. Differential dopaminergic modulation of spontaneous cortico-subthalamic activity in Parkinson's disease. ''Elife''. 2021 Jun 4; '''10''':
Representation of social content in dorsomedial prefrontal cortex underlies individual differences in agreeableness trait. Description: Arbula, Sandra, et al. Representation of social content in dorsomedial prefrontal cortex underlies individual differences in agreeableness trait. ''Neuroimage''. 2021 Jul 15; '''235''': 118049
Regional grey matter microstructural changes and volume loss according to disease duration in multiple sclerosis patients. Description: Solana, Elisabeth, et al. Regional grey matter microstructural changes and volume loss according to disease duration in multiple sclerosis patients. ''Sci Rep''. 2021 Aug 19; '''11''' (1):16805
Separable neural signatures of confidence during perceptual decisions. Description: Balsdon, Tarryn, et al. Separable neural signatures of confidence during perceptual decisions. ''Elife''. 2021 Sep 7; '''10''':
The "Narratives" fMRI dataset for evaluating models of naturalistic language comprehension. Description: Nastase, Samuel A, et al. The "Narratives" fMRI dataset for evaluating models of naturalistic language comprehension. ''Sci Data''. 2021 Sep 28; '''8''' (1):250
Structural brain dynamics across reading development: A longitudinal MRI study from kindergarten to grade 5. Description: Phan, Thanh Van, et al. Structural brain dynamics across reading development: A longitudinal MRI study from kindergarten to grade 5. ''Hum Brain Mapp''. 2021 Oct 1; '''42''' (14):4497-4509
Dynamics and Predictors of Cognitive Impairment along the Disease Course in Multiple Sclerosis. Description: Lopez-Soley, Elisabet, et al. Dynamics and Predictors of Cognitive Impairment along the Disease Course in Multiple Sclerosis. ''J Pers Med''. 2021 Oct 28; '''11''' (11):
Frontoparietal pattern similarity analyses of cognitive control in monozygotic twins. Description: Tang, Rongxiang, et al. Frontoparietal pattern similarity analyses of cognitive control in monozygotic twins. ''Neuroimage''. 2021 Nov 1; '''241''': 118415
Striatal and septo-hypothalamic responses to anticipation and outcome of affiliative rewards. Description: Bortolini, Tiago, et al. Striatal and septo-hypothalamic responses to anticipation and outcome of affiliative rewards. ''Neuroimage''. 2021 Nov; '''243''': 118474
Brain morphometry and diminished physical growth in Bangladeshi children growing up in extreme poverty: A longitudinal study. Description: Turesky, Ted K, et al. Brain morphometry and diminished physical growth in Bangladeshi children growing up in extreme poverty: A longitudinal study. ''Dev Cogn Neurosci''. 2021 Dec; '''52''': 101029
Robust BOLD Responses to Faces But Not to Conditioned Threat: Challenging the Amygdala's Reputation in Human Fear and Extinction Learning. Description: Visser, Renee M, et al. Robust BOLD Responses to Faces But Not to Conditioned Threat: Challenging the Amygdala's Reputation in Human Fear and Extinction Learning. ''J Neurosci''. 2021 Dec 15; '''41''' (50):10278-10292
Functional brain network community structure in childhood: Unfinished territories and fuzzy boundaries. Description: Tooley, Ursula A, et al. Functional brain network community structure in childhood: Unfinished territories and fuzzy boundaries. ''Neuroimage''. 2022 Feb 15; '''247''': 118843
Isolating the sources of pipeline-variability in group-level task-fMRI results. Description: Bowring, Alexander, et al. Isolating the sources of pipeline-variability in group-level task-fMRI results. ''Hum Brain Mapp''. 2022 Feb 15; '''43''' (3):1112-1128
The relationship between craving and insular morphometry in regular cocaine users: Does sex matter? Description: Abdel Malek, George S, et al. The relationship between craving and insular morphometry in regular cocaine users: Does sex matter? ''Addict Biol''. 2022 Mar; '''27''' (2):e13157
The Dual Mechanisms of Cognitive Control dataset, a theoretically-guided within-subject task fMRI battery. Description: Etzel, Joset A, et al. The Dual Mechanisms of Cognitive Control dataset, a theoretically-guided within-subject task fMRI battery. ''Sci Data''. 2022 Mar 29; '''9''' (1):114
Best Practices in Structural Neuroimaging of Neurodevelopmental Disorders. Description: Backhausen, Lea L, et al. Best Practices in Structural Neuroimaging of Neurodevelopmental Disorders. ''Neuropsychol Rev''. 2022 Jun; '''32''' (2):400-418
Multimodal biological brain age prediction using magnetic resonance imaging and angiography with the identification of predictive regions. Description: Mouches, Pauline, et al. Multimodal biological brain age prediction using magnetic resonance imaging and angiography with the identification of predictive regions. ''Hum Brain Mapp''. 2022 Jun 1; '''43''' (8):2554-2566
Developmental changes in story-evoked responses in the neocortex and hippocampus. Description: Cohen, Samantha S, et al. Developmental changes in story-evoked responses in the neocortex and hippocampus. ''Elife''. 2022 Jul 5; '''11''':
Brain networks are decoupled from external stimuli during internal cognition. Description: Cohen, Dror, et al. Brain networks are decoupled from external stimuli during internal cognition. ''Neuroimage''. 2022 Aug 1; '''256''': 119230
Real-time neurofeedback to alter interpretations of a naturalistic narrative. Description: Mennen, Anne C, et al. Real-time neurofeedback to alter interpretations of a naturalistic narrative. ''Neuroimage Rep''. 2022 Sep; '''2''' (3):
Resting-state magnetoencephalographic oscillatory connectivity to identify patients with chronic migraine using machine learning. Description: Hsiao, Fu-Jung, et al. Resting-state magnetoencephalographic oscillatory connectivity to identify patients with chronic migraine using machine learning. ''J Headache Pain''. 2022 Oct 3; '''23''' (1):130
Intrinsic connectivity within the affective salience network moderates adolescent susceptibility to negative and positive peer norms. Description: Do, Kathy T, et al. Intrinsic connectivity within the affective salience network moderates adolescent susceptibility to negative and positive peer norms. ''Sci Rep''. 2022 Oct 19; '''12''' (1):17463
Predicting brain activation maps for arbitrary tasks with cognitive encoding models. Description: Walters, Jonathon, et al. Predicting brain activation maps for arbitrary tasks with cognitive encoding models. ''Neuroimage''. 2022 Nov; '''263''': 119610
Evidence for a single rather than a triple dissociation in the medial temporal lobe: An fMRI recognition memory replication study. Description: Van, Julie, et al. Evidence for a single rather than a triple dissociation in the medial temporal lobe: An fMRI recognition memory replication study. ''Neuroimage Rep''. 2022 Dec; '''2''' (4):100135
L-DOPA enhances neural direction signals in younger and older adults. Description: Koch, Christoph, et al. L-DOPA enhances neural direction signals in younger and older adults. ''Neuroimage''. 2022 Dec 1; '''264''': 119670
Differential neural reward reactivity in response to food advertising medium in children. Description: Yeum, Dabin, et al. Differential neural reward reactivity in response to food advertising medium in children. ''Front Neurosci''. 2023; '''17''': 1052384
Differential working memory function between phonological and visuospatial strategies: a magnetoencephalography study using a same visual task. Description: Onishi, Hayate, et al. Differential working memory function between phonological and visuospatial strategies: a magnetoencephalography study using a same visual task. ''Front Hum Neurosci''. 2023; '''17''': 1218437
The PyMVPA BIDS-App: a robust multivariate pattern analysis pipeline for fMRI data. Description: Torabian, Sajjad, et al. The PyMVPA BIDS-App: a robust multivariate pattern analysis pipeline for fMRI data. ''Front Neurosci''. 2023; '''17''': 1233416
Network structure influences the strength of learned neural representations. Description: Kahn, Ari E, et al. Network structure influences the strength of learned neural representations. ''bioRxiv''. 2023 Jan 24;
Functional Connectivity of the Cerebellar Vermis in Bipolar Disorder and Associations with Mood. Description: Saleem, Arshaq, et al. Functional Connectivity of the Cerebellar Vermis in Bipolar Disorder and Associations with Mood. ''bioRxiv''. 2023 Feb 6;
Representational integration and differentiation in the human hippocampus following goal-directed navigation. Description: Fernandez, Corey, et al. Representational integration and differentiation in the human hippocampus following goal-directed navigation. ''Elife''. 2023 Feb 14; '''12''':
Modulation of amygdala activity for emotional faces due to botulinum toxin type A injections that prevent frowning. Description: Stark, Shauna, et al. Modulation of amygdala activity for emotional faces due to botulinum toxin type A injections that prevent frowning. ''Sci Rep''. 2023 Feb 27; '''13''' (1):3333
Flexible reuse of cortico-hippocampal representations during encoding and recall of naturalistic events. Description: Reagh, Zachariah M, et al. Flexible reuse of cortico-hippocampal representations during encoding and recall of naturalistic events. ''Nat Commun''. 2023 Mar 8; '''14''' (1):1279
Transfer Learning in Trajectory Decoding: Sensor or Source Space? Description: Srisrisawang, Nitikorn, et al. Transfer Learning in Trajectory Decoding: Sensor or Source Space? ''Sensors (Basel)''. 2023 Mar 30; '''23''' (7):
A ready-to-use machine learning tool for symmetric multi-modality registration of brain MRI. Description: Iglesias, Juan Eugenio. A ready-to-use machine learning tool for symmetric multi-modality registration of brain MRI. ''Sci Rep''. 2023 Apr 24; '''13''' (1):6657
Poorer sleep health is associated with altered brain activation during cognitive control processing in healthy adults. Description: Smevik, Hanne, et al. Poorer sleep health is associated with altered brain activation during cognitive control processing in healthy adults. ''Cereb Cortex''. 2023 May 24; '''33''' (11):7100-7119
Task state representations in vmPFC mediate relevant and irrelevant value signals and their behavioral influence. Description: Moneta, Nir, et al. Task state representations in vmPFC mediate relevant and irrelevant value signals and their behavioral influence. ''Nat Commun''. 2023 May 31; '''14''' (1):3156
Toward a statistical validation of brain signatures as robust measures of behavioral substrates. Description: Fletcher, Evan, et al. Toward a statistical validation of brain signatures as robust measures of behavioral substrates. ''Hum Brain Mapp''. 2023 Jun 1; '''44''' (8):3094-3111
Prediction of early improvement of major depressive disorder to antidepressant medication in adolescents with radiomics analysis after ComBat harmonization based on multiscale structural MRI. Description: Ma, Huan, et al. Prediction of early improvement of major depressive disorder to antidepressant medication in adolescents with radiomics analysis after ComBat harmonization based on multiscale structural MRI. ''BMC Psychiatry''. 2023 Jun 26; '''23''' (1):466
Neural similarity in nucleus accumbens during decision-making for the self and a best friend: Links to adolescents' self-reported susceptibility to peer influence and risk taking. Description: Dai, Junqiang, et al. Neural similarity in nucleus accumbens during decision-making for the self and a best friend: Links to adolescents' self-reported susceptibility to peer influence and risk taking. ''Hum Brain Mapp''. 2023 Jul; '''44''' (10):3972-3985
Brain tissue iron neurophysiology and its relationship with the cognitive effects of dopaminergic modulation in children with and without ADHD. Description: Cascone, Arianna D, et al. Brain tissue iron neurophysiology and its relationship with the cognitive effects of dopaminergic modulation in children with and without ADHD. ''Dev Cogn Neurosci''. 2023 Jul 7; '''63''': 101274
Statistical inference on representational geometries. Description: Schutt, Heiko H, et al. Statistical inference on representational geometries. ''Elife''. 2023 Aug 23; '''12''':
Placebo treatment affects brain systems related to affective and cognitive processes, but not nociceptive pain. Description: Botvinik-Nezer, Rotem, et al. Placebo treatment affects brain systems related to affective and cognitive processes, but not nociceptive pain. ''bioRxiv''. 2023 Sep 30;
Aging-related volume changes in the brain and cerebrospinal fluid using artificial intelligence-automated segmentation. Description: Yamada, Shigeki, et al. Aging-related volume changes in the brain and cerebrospinal fluid using artificial intelligence-automated segmentation. ''Eur Radiol''. 2023 Oct; '''33''' (10):7099-7112
Exploring the performance of implicit neural representations for brain image registration. Description: Byra, Michal, et al. Exploring the performance of implicit neural representations for brain image registration. ''Sci Rep''. 2023 Oct 13; '''13''' (1):17334
Characteristic oscillatory brain networks for predicting patients with chronic migraine. Description: Hsiao, Fu-Jung, et al. Characteristic oscillatory brain networks for predicting patients with chronic migraine. ''J Headache Pain''. 2023 Oct 18; '''24''' (1):139
Multilayer network associations between the exposome and childhood brain development. Description: Simpson-Kent, Ivan L, et al. Multilayer network associations between the exposome and childhood brain development. ''bioRxiv''. 2023 Oct 25;
Hippocampal mechanisms resolve competition in memory and perception. Description: Favila, Serra E, et al. Hippocampal mechanisms resolve competition in memory and perception. ''bioRxiv''. 2023 Nov 3;
Neural signatures of emotional inference and experience align during social consensus. Description: Reddan, Marianne, et al. Neural signatures of emotional inference and experience align during social consensus. ''Res Sq''. 2023 Nov 17;
The shared and unique neural correlates of personal semantic, general semantic, and episodic memory. Description: Tanguay, Annick F N, et al. The shared and unique neural correlates of personal semantic, general semantic, and episodic memory. ''Elife''. 2023 Nov 21; '''12''':
Establishing the Roles of the Dorsal and Ventral Striatum in Humor Comprehension and Appreciation with fMRI. Description: Prenger, Margaret, et al. Establishing the Roles of the Dorsal and Ventral Striatum in Humor Comprehension and Appreciation with fMRI. ''J Neurosci''. 2023 Dec 6; '''43''' (49):8536-8546
Integration and segregation manifolds in the brain ensure cognitive flexibility during tasks and rest. Description: Capouskova, Katerina, et al. Integration and segregation manifolds in the brain ensure cognitive flexibility during tasks and rest. ''Hum Brain Mapp''. 2023 Dec 15; '''44''' (18):6349-6363
Structural Outlier Detection and Zernike-Canterakis Moments for Molecular Surface Meshes-Fast Implementation in Python. Description: Banach, Mateusz. Structural Outlier Detection and Zernike-Canterakis Moments for Molecular Surface Meshes-Fast Implementation in Python. ''Molecules''. 2023 Dec 21; '''29''' (1):
Brain morphometry and chronic inflammation in Bangladeshi children growing up in extreme poverty. Description: Turesky, Ted K, et al. Brain morphometry and chronic inflammation in Bangladeshi children growing up in extreme poverty. ''Imaging Neurosci (Camb)''. 2024; '''2''':
Human brain activity and functional connectivity associated with verbal long-term memory consolidation across 1 month. Description: Tallman, Catherine W, et al. Human brain activity and functional connectivity associated with verbal long-term memory consolidation across 1 month. ''Front Hum Neurosci''. 2024; '''18''': 1342552
Mental rotation-related neural interactions between gender and cognitive strategy. Description: Bersier, Nadia Marie, et al. Mental rotation-related neural interactions between gender and cognitive strategy. ''Imaging Neurosci (Camb)''. 2024; '''2''':
Relationship Between Resting State Functional Connectivity and Reading-Related Behavioural Measures in 69 Adults. Description: Bathelt, Joe, et al. Relationship Between Resting State Functional Connectivity and Reading-Related Behavioural Measures in 69 Adults. ''Neurobiol Lang (Camb)''. 2024; '''5''' (2):589-607
The Domain-Specific Neural Basis of Auditory Statistical Learning in 5-7-Year-Old Children. Description: Fan, Tengwen, et al. The Domain-Specific Neural Basis of Auditory Statistical Learning in 5-7-Year-Old Children. ''Neurobiol Lang (Camb)''. 2024; '''5''' (4):981-1007
The position of visual word forms in the anatomical and representational space of visual categories in occipitotemporal cortex. Description: Pillet, Ineke, et al. The position of visual word forms in the anatomical and representational space of visual categories in occipitotemporal cortex. ''Imaging Neurosci (Camb)''. 2024; '''2''':
Working memory related functional connectivity in adult ADHD and its amenability to training: A randomized controlled trial. Description: Tolonen, Tuija, et al. Working memory related functional connectivity in adult ADHD and its amenability to training: A randomized controlled trial. ''Neuroimage Clin''. 2024; '''44''': 103696
A multi-sample evaluation of the measurement structure and function of the modified monetary incentive delay task in adolescents. Description: Demidenko, Michael I, et al. A multi-sample evaluation of the measurement structure and function of the modified monetary incentive delay task in adolescents. ''Dev Cogn Neurosci''. 2024 Feb; '''65''': 101337
Cortical and subcortical microstructure integrity changes after repetitive transcranial magnetic stimulation therapy in cocaine use disorder and relates to clinical outcomes. Description: Rasgado-Toledo, Jalil, et al. Cortical and subcortical microstructure integrity changes after repetitive transcranial magnetic stimulation therapy in cocaine use disorder and relates to clinical outcomes. ''Addict Biol''. 2024 Feb; '''29''' (2):e13381
Adolescents' pain-related ontogeny shares a neural basis with adults' chronic pain in basothalamo-cortical organization. Description: Heukamp, Nils Jannik, et al. Adolescents' pain-related ontogeny shares a neural basis with adults' chronic pain in basothalamo-cortical organization. ''iScience''. 2024 Feb 16; '''27''' (2):108954
Multimodal single-neuron, intracranial EEG, and fMRI brain responses during movie watching in human patients. Description: Keles, Umit, et al. Multimodal single-neuron, intracranial EEG, and fMRI brain responses during movie watching in human patients. ''Sci Data''. 2024 Feb 16; '''11''' (1):214
Non-invasive neuromodulation of cerebello-hippocampal volume-behavior relationships. Description: Magalhaes, Thamires N C, et al. Non-invasive neuromodulation of cerebello-hippocampal volume-behavior relationships. ''bioRxiv''. 2024 Apr 1;
Lateral frontoparietal functional connectivity based on individual sulcal morphology. Description: Hakkinen, Suvi, et al. Lateral frontoparietal functional connectivity based on individual sulcal morphology. ''bioRxiv''. 2024 Apr 18;
Reliability and predictability of phenotype information from functional connectivity in large imaging datasets. Description: Dafflon, Jessica, et al. Reliability and predictability of phenotype information from functional connectivity in large imaging datasets. ''ArXiv''. 2024 May 1;
The Brain's Topographical Organization Shapes Dynamic Interaction Patterns That Support Flexible Behavior Based on Rules and Long-Term Knowledge. Description: Wang, Xiuyi, et al. The Brain's Topographical Organization Shapes Dynamic Interaction Patterns That Support Flexible Behavior Based on Rules and Long-Term Knowledge. ''J Neurosci''. 2024 May 29; '''44''' (22):
Microscopic fractional anisotropy outperforms multiple sclerosis lesion assessment and clinical outcome associations over standard fractional anisotropy tensor. Description: Vivo, F, et al. Microscopic fractional anisotropy outperforms multiple sclerosis lesion assessment and clinical outcome associations over standard fractional anisotropy tensor. ''Hum Brain Mapp''. 2024 Jun 1; '''45''' (8):e26706
Longitudinal Neuroanatomical Increases from Early to One-Year Postpartum. Description: Dufford, Alexander, et al. Longitudinal Neuroanatomical Increases from Early to One-Year Postpartum. ''Res Sq''. 2024 Jun 3;
Understanding the role of cerebellum in early Parkinson's disease: a structural and functional MRI study. Description: Pietracupa, S, et al. Understanding the role of cerebellum in early Parkinson's disease: a structural and functional MRI study. ''NPJ Parkinsons Dis''. 2024 Jun 19; '''10''' (1):119
Reconfigurations of cortical manifold structure during reward-based motor learning. Description: Nick, Qasem, et al. Reconfigurations of cortical manifold structure during reward-based motor learning. ''Elife''. 2024 Jun 25; '''12''':
Macroscale brain states support the control of semantic cognition. Description: Wang, Xiuyi, et al. Macroscale brain states support the control of semantic cognition. ''Commun Biol''. 2024 Aug 1; '''7''' (1):926
Replay-triggered brain-wide activation in humans. Description: Huang, Qi, et al. Replay-triggered brain-wide activation in humans. ''Nat Commun''. 2024 Aug 21; '''15''' (1):7185
Multivariate sharp-wave ripples in schizophrenia during awake state. Description: Ohki, Takefumi, et al. Multivariate sharp-wave ripples in schizophrenia during awake state. ''Psychiatry Clin Neurosci''. 2024 Sep; '''78''' (9):507-516
Frontoparietal network topology as a neural marker of musical perceptual abilities. Description: Lumaca, M, et al. Frontoparietal network topology as a neural marker of musical perceptual abilities. ''Nat Commun''. 2024 Sep 17; '''15''' (1):8160
Understanding Depression in Autism: The Role of Subjective Perception and Anterior Cingulate Cortex Volume. Description: Hao, Yu, et al. Understanding Depression in Autism: The Role of Subjective Perception and Anterior Cingulate Cortex Volume. ''Res Sq''. 2024 Sep 20;
The brain hierarchically represents the past and future during multistep anticipation. Description: Tarder-Stoll, Hannah, et al. The brain hierarchically represents the past and future during multistep anticipation. ''Nat Commun''. 2024 Oct 22; '''15''' (1):9094
Distinct patterns of connectivity with the motor cortex reflect different components of sensorimotor learning. Description: Areshenkoff, Corson N, et al. Distinct patterns of connectivity with the motor cortex reflect different components of sensorimotor learning. ''PLoS Biol''. 2024 Dec; '''22''' (12):e3002934
COMMON AND DISTINCT NEURAL CORRELATES OF SOCIAL INTERACTION PERCEPTION AND THEORY OF MIND. Description: Miao, Zizhuang, et al. COMMON AND DISTINCT NEURAL CORRELATES OF SOCIAL INTERACTION PERCEPTION AND THEORY OF MIND. ''bioRxiv''. 2024 Dec 20;
Assessing the role of volumetric brain information in multiple sclerosis progression. Description: Shen, Andy A, et al. Assessing the role of volumetric brain information in multiple sclerosis progression. ''Comput Struct Biotechnol J''. 2025; '''27''': 2014-2033
Beyond the chronic pain stage: default mode network perturbation depends on years lived with back pain. Description: Heukamp, Nils Jannik, et al. Beyond the chronic pain stage: default mode network perturbation depends on years lived with back pain. ''Pain''. 2025 Jan 1; '''166''' (1):160-170
Evaluating lesion-specific preprocessing pipelines for rs-fMRI in stroke patients: Impact on functional connectivity and behavioral prediction. Description: Lamouroux, Alix, et al. Evaluating lesion-specific preprocessing pipelines for rs-fMRI in stroke patients: Impact on functional connectivity and behavioral prediction. ''Imaging Neurosci (Camb)''. 2025; '''3''':
Pattern integration and differentiation: Dual process model of episodic memory. Description: Evensmoen, Hallvard Roe, et al. Pattern integration and differentiation: Dual process model of episodic memory. ''Imaging Neurosci (Camb)''. 2025; '''3''':
Representation of navigational affordances and ego-motion in the occipital place area. Description: Kamps, Frederik S, et al. Representation of navigational affordances and ego-motion in the occipital place area. ''Imaging Neurosci (Camb)''. 2025; '''3''':
Multi-study fMRI outlooks on subcortical BOLD responses in the stop-signal paradigm. Description: Isherwood, Scott, et al. Multi-study fMRI outlooks on subcortical BOLD responses in the stop-signal paradigm. ''Elife''. 2025 Jan 22; '''12''':
Understanding depression in autism: the role of subjective perception and anterior cingulate cortex volume. Description: Hao, Yu, et al. Understanding depression in autism: the role of subjective perception and anterior cingulate cortex volume. ''Mol Autism''. 2025 Feb 10; '''16''' (1):9
Cerebral morphometric alterations predict the outcome of migraine diagnosis and subtyping: a radiomics analysis. Description: Wang, Tong-Xing, et al. Cerebral morphometric alterations predict the outcome of migraine diagnosis and subtyping: a radiomics analysis. ''BMC Med Imaging''. 2025 Apr 7; '''25''' (1):110
A neurocomputational account of the link between social perception and social action. Description: Bas, Lisa M, et al. A neurocomputational account of the link between social perception and social action. ''Elife''. 2025 Apr 16; '''12''':
Hippocampal-entorhinal cognitive maps and cortical motor system represent action plans and their outcomes. Description: Barnaveli, Irina, et al. Hippocampal-entorhinal cognitive maps and cortical motor system represent action plans and their outcomes. ''Nat Commun''. 2025 May 3; '''16''' (1):4139
Advanced diffusion imaging in grey matter reflects individual differences in cognitive ability in older adults. Description: Kimbler, Adam, et al. Advanced diffusion imaging in grey matter reflects individual differences in cognitive ability in older adults. ''bioRxiv''. 2025 May 30;
Brain Aging in Patients With Cardiovascular Disease From the UK Biobank. Description: Mcavoy, Elizabeth, et al. Brain Aging in Patients With Cardiovascular Disease From the UK Biobank. ''Hum Brain Mapp''. 2025 Jun 1; '''46''' (8):e70252
Network-targeted transcranial magnetic stimulation (TMS) for mild cognitive impairment (MCI). Description: Taylor, Joy L, et al. Network-targeted transcranial magnetic stimulation (TMS) for mild cognitive impairment (MCI). ''Neuroimage Clin''. 2025 Jun 6; '''47''': 103819
Emotions in the Brain Are Dynamic and Contextually Dependent: Using Music to Measure Affective Transitions. Description: Sachs, Matthew E, et al. Emotions in the Brain Are Dynamic and Contextually Dependent: Using Music to Measure Affective Transitions. ''eNeuro''. 2025 Jul; '''12''' (7):
Relational Integration Demands Are Tracked by Temporally Delayed Neural Representations in Alpha and Beta Rhythms Within Higher-Order Cortical Networks. Description: Robinson, Conor, et al. Relational Integration Demands Are Tracked by Temporally Delayed Neural Representations in Alpha and Beta Rhythms Within Higher-Order Cortical Networks. ''Hum Brain Mapp''. 2025 Jul; '''46''' (10):e70272
Music-evoked reactivation during continuous perception is associated with enhanced subsequent recall of naturalistic events. Description: Williams, Jamal A, et al. Music-evoked reactivation during continuous perception is associated with enhanced subsequent recall of naturalistic events. ''bioRxiv''. 2025 Jul 6;
Neural signatures of emotional intent and inference align during social consensus. Description: Reddan, Marianne C, et al. Neural signatures of emotional intent and inference align during social consensus. ''Nat Commun''. 2025 Jul 8; '''16''' (1):6156
High-field fMRI at 7 Tesla reveals topographic responses tuned to number in the developing human brain. Description: Jeong, Ga-Ram, et al. High-field fMRI at 7 Tesla reveals topographic responses tuned to number in the developing human brain. ''Dev Cogn Neurosci''. 2025 Jul 18; '''75''': 101598
Distance- and Hierarchy-Dependent Functional Dysconnectivity in Schizophrenia and Its Association with Cortical Microstructure. Description: David, Isaac, et al. Distance- and Hierarchy-Dependent Functional Dysconnectivity in Schizophrenia and Its Association with Cortical Microstructure. ''medRxiv''. 2025 Jul 28;
Deep Learning-based Hierarchical Brain Segmentation with Preliminary Analysis of the Repeatability and Reproducibility. Description: Goto, Masami, et al. Deep Learning-based Hierarchical Brain Segmentation with Preliminary Analysis of the Repeatability and Reproducibility. ''Magn Reson Med Sci''. 2025 Jul 31; '''24''' (4):
Generalized learning induced by training and tDCS is predicted by prefrontal cortical morphology. Description: Ehrhardt, Shane E, et al. Generalized learning induced by training and tDCS is predicted by prefrontal cortical morphology. ''Cereb Cortex''. 2025 Aug 1; '''35''' (8):
Transfer of motor learning is associated with patterns of activity in the default mode network. Description: Rezaei, Ali, et al. Transfer of motor learning is associated with patterns of activity in the default mode network. ''PLoS Biol''. 2025 Aug; '''23''' (8):e3003268
The human cerebellum encodes temporally sensitive reinforcement learning signals. Description: Trach, Juliana E, et al. The human cerebellum encodes temporally sensitive reinforcement learning signals. ''bioRxiv''. 2025 Sep 7;
The Hippocampus Rapidly Integrates Sequence Representations During Novel Multistep Predictions. Description: Tarder-Stoll, Hannah, et al. The Hippocampus Rapidly Integrates Sequence Representations During Novel Multistep Predictions. ''bioRxiv''. 2025 Sep 15;
Model-based and model-free valuation signals in the human brain vary markedly in their relationship to individual differences in behavioral control. Description: Ding, Weilun, et al. Model-based and model-free valuation signals in the human brain vary markedly in their relationship to individual differences in behavioral control. ''bioRxiv''. 2025 Sep 25;
Savings in visuomotor learning are associated with connectivity changes within a cerebello-thalamo-cortical network encoding movement errors. Description: Struber, Lucas, et al. Savings in visuomotor learning are associated with connectivity changes within a cerebello-thalamo-cortical network encoding movement errors. ''Brain Struct Funct''. 2025 Oct 13; '''230''' (8):156
Progressive Changes Between Thalamic Nuclei and Cortical Networks Across Stimulus-Response Learning. Description: Jarrett, Chelsea, et al. Progressive Changes Between Thalamic Nuclei and Cortical Networks Across Stimulus-Response Learning. ''Hum Brain Mapp''. 2025 Oct 15; '''46''' (15):e70382
Different brain regions support deliberation during food choice in disordered and healthy eating. Description: Muratore, Alexandra F, et al. Different brain regions support deliberation during food choice in disordered and healthy eating. ''Res Sq''. 2025 Oct 28;
The Human Claustrum Activates Across Multiple Cognitive Control Tasks. Description: Huang, Celine H L, et al. The Human Claustrum Activates Across Multiple Cognitive Control Tasks. ''Eur J Neurosci''. 2025 Nov; '''62''' (9):e70318
Neural mechanisms of handedness for precision drawing: hand-dependent engagement of cortical networks for bimanual control and tool use. Description: Kapil, N, et al. Neural mechanisms of handedness for precision drawing: hand-dependent engagement of cortical networks for bimanual control and tool use. ''bioRxiv''. 2025 Nov 18;
Temporal stability and neural complexity in resting-state MEG predict migraine phenotypes. Description: Hsiao, Fu-Jung, et al. Temporal stability and neural complexity in resting-state MEG predict migraine phenotypes. ''J Headache Pain''. 2025 Dec 3; '''26''' (1):280
Combined magnetic resonance imaging and serum analysis reveals distinct multiple sclerosis types. Description: Willard, Charles, et al. Combined magnetic resonance imaging and serum analysis reveals distinct multiple sclerosis types. ''Brain''. 2025 Dec 4; '''148''' (12):4578-4591
Network Neuroscience of Human Multitasking: Local Connections Matter. Description: Mueckstein, Marie, et al. Network Neuroscience of Human Multitasking: Local Connections Matter. ''Hum Brain Mapp''. 2025 Dec 15; '''46''' (18):e70434
Examining Smartphone-assessed Executive Function Metrics and Intrinsic Resting-State Functional Connectivity in Depression. Description: Heckel, Julia M, et al. Examining Smartphone-assessed Executive Function Metrics and Intrinsic Resting-State Functional Connectivity in Depression. ''Res Sq''. 2025 Dec 19;
Computational and neural mechanisms underlying the influence of action affordances on value learning. Description: Yi, Sanghyun, et al. Computational and neural mechanisms underlying the influence of action affordances on value learning. ''Nat Commun''. 2026 Jan 8; '''17''' (1):1096
Predicting Continuous Cognitive Decline: The Generalizability of a Multimodal Machine Learning Approach Including Structural MRI and Non-Brain Data. Description: Huppi, Roya Melanie, et al. Predicting Continuous Cognitive Decline: The Generalizability of a Multimodal Machine Learning Approach Including Structural MRI and Non-Brain Data. ''medRxiv''. 2026 Jan 15;
Advancing whole-brain BOLD functional MRI in humans at 10.5 T with motion-robust 3D echo-planar imaging, parallel transmission, and high-density radiofrequency receive coils. Description: Qu, Shuxian, et al. Advancing whole-brain BOLD functional MRI in humans at 10.5 T with motion-robust 3D echo-planar imaging, parallel transmission, and high-density radiofrequency receive coils. ''Magn Reson Med''. 2026 Feb; '''95''' (2):1068-1088
The Relationship Between Precuneus Thickness and Psychopathology in Adolescent Females With Anorexia Nervosa. Description: Jarvers, Irina, et al. The Relationship Between Precuneus Thickness and Psychopathology in Adolescent Females With Anorexia Nervosa. ''Int J Eat Disord''. 2026 Feb; '''59''' (2):384-400
Distance- and hierarchy-dependent functional dysconnectivity in schizophrenia and its association with cortical microstructure. Description: David, Isaac, et al. Distance- and hierarchy-dependent functional dysconnectivity in schizophrenia and its association with cortical microstructure. ''Neuroimage Clin''. 2026 Feb 4; '''49''': 103958