PubMed Mentions
The links below are to publications on PubMed referring to Brian simulator. This list is gathered weekly from PubMed automatically and was last updated on September 19, 2026.
| Publication/References | |
| Location, location, location: how it affects the neighborhood (effect). Description: Whitney, Carol. Location, location, location: how it affects the neighborhood (effect). ''Brain Lang''. 2011 Sep; '''118''' (3):90-104 | |
| Neuronal morphology goes digital: a research hub for cellular and system neuroscience. Description: Parekh, Ruchi, et al. Neuronal morphology goes digital: a research hub for cellular and system neuroscience. ''Neuron''. 2013 Mar 20; '''77''' (6):1017-38 | |
| Computational modeling of epilepsy for an experimental neurologist. Description: Holt, Abbey B, et al. Computational modeling of epilepsy for an experimental neurologist. ''Exp Neurol''. 2013 Jun; '''244''': 75-86 | |
| Pronounced differences in signal processing and synaptic plasticity between piriform-hippocampal network stages: a prominent role for adenosine. Description: Trieu, Brian H, et al. Pronounced differences in signal processing and synaptic plasticity between piriform-hippocampal network stages: a prominent role for adenosine. ''J Physiol''. 2015 Jul 1; '''593''' (13):2889-907 | |
| A model for attentional information routing through coherence predicts biased competition and multistable perception. Description: Harnack, Daniel, et al. A model for attentional information routing through coherence predicts biased competition and multistable perception. ''J Neurophysiol''. 2015 Sep; '''114''' (3):1593-605 | |
| A circuit motif in the zebrafish hindbrain for a two alternative behavioral choice to turn left or right. Description: Koyama, Minoru, et al. A circuit motif in the zebrafish hindbrain for a two alternative behavioral choice to turn left or right. ''Elife''. 2016 Aug 9; '''5''': | |
| In Vivo Imaging of Dentate Gyrus Mossy Cells in Behaving Mice. Description: Danielson, Nathan B, et al. In Vivo Imaging of Dentate Gyrus Mossy Cells in Behaving Mice. ''Neuron''. 2017 Feb 8; '''93''' (3):552-559.e4 | |
| Beyond excitation/inhibition imbalance in multidimensional models of neural circuit changes in brain disorders. Description: O'Donnell, Cian, et al. Beyond excitation/inhibition imbalance in multidimensional models of neural circuit changes in brain disorders. ''Elife''. 2017 Oct 11; '''6''': | |
| Interneurons in the Honeybee Primary Auditory Center Responding to Waggle Dance-Like Vibration Pulses. Description: Ai, Hiroyuki, et al. Interneurons in the Honeybee Primary Auditory Center Responding to Waggle Dance-Like Vibration Pulses. ''J Neurosci''. 2017 Nov 1; '''37''' (44):10624-10635 | |
| Reproducible Neural Network Simulations: Statistical Methods for Model Validation on the Level of Network Activity Data. Description: Gutzen, Robin, et al. Reproducible Neural Network Simulations: Statistical Methods for Model Validation on the Level of Network Activity Data. ''Front Neuroinform''. 2018; '''12''': 90 | |
| Neuroscience: Modeling the Brain on Acid. Description: van der Meer, Johan, et al. Neuroscience: Modeling the Brain on Acid. ''Curr Biol''. 2018 Oct 8; '''28''' (19):R1157-R1160 | |
| The Spectrum of Asynchronous Dynamics in Spiking Networks as a Model for the Diversity of Non-rhythmic Waking States in the Neocortex. Description: Zerlaut, Yann, et al. The Spectrum of Asynchronous Dynamics in Spiking Networks as a Model for the Diversity of Non-rhythmic Waking States in the Neocortex. ''Cell Rep''. 2019 Apr 23; '''27''' (4):1119-1132.e7 | |
| Open Source Brain: A Collaborative Resource for Visualizing, Analyzing, Simulating, and Developing Standardized Models of Neurons and Circuits. Description: Gleeson, Padraig, et al. Open Source Brain: A Collaborative Resource for Visualizing, Analyzing, Simulating, and Developing Standardized Models of Neurons and Circuits. ''Neuron''. 2019 Aug 7; '''103''' (3):395-411.e5 | |
| Brian 2, an intuitive and efficient neural simulator. Description: Stimberg, Marcel, et al. Brian 2, an intuitive and efficient neural simulator. ''Elife''. 2019 Aug 20; '''8''': | |
| Neural Interactions in Developing Rhythmogenic Spinal Networks: Insights From Computational Modeling. Description: Shevtsova, Natalia A, et al. Neural Interactions in Developing Rhythmogenic Spinal Networks: Insights From Computational Modeling. ''Front Neural Circuits''. 2020; '''14''': 614615 | |
| Pre-stimulus phase and amplitude regulation of phase-locked responses are maximized in the critical state. Description: Avramiea, Arthur-Ervin, et al. Pre-stimulus phase and amplitude regulation of phase-locked responses are maximized in the critical state. ''Elife''. 2020 Apr 27; '''9''': | |
| Presynaptic inhibition rapidly stabilises recurrent excitation in the face of plasticity. Description: Naumann, Laura Bella, et al. Presynaptic inhibition rapidly stabilises recurrent excitation in the face of plasticity. ''PLoS Comput Biol''. 2020 Aug; '''16''' (8):e1008118 | |
| Empirically constrained network models for contrast-dependent modulation of gamma rhythm in V1. Description: Zachariou, Margarita, et al. Empirically constrained network models for contrast-dependent modulation of gamma rhythm in V1. ''Neuroimage''. 2021 Apr 1; '''229''': 117748 | |
| Control of parallel hippocampal output pathways by amygdalar long-range inhibition. Description: AlSubaie, Rawan, et al. Control of parallel hippocampal output pathways by amygdalar long-range inhibition. ''Elife''. 2021 Nov 30; '''10''': | |
| Activity-dependent modulation of NMDA receptors by endogenous zinc shapes dendritic function in cortical neurons. Description: Morabito, Annunziato, et al. Activity-dependent modulation of NMDA receptors by endogenous zinc shapes dendritic function in cortical neurons. ''Cell Rep''. 2022 Feb 22; '''38''' (8):110415 | |
| Neural readout of a latency code in the active electrosensory system. Description: Perks, Krista E, et al. Neural readout of a latency code in the active electrosensory system. ''Cell Rep''. 2022 Mar 29; '''38''' (13):110605 | |
| Paradoxical self-sustained dynamics emerge from orchestrated excitatory and inhibitory homeostatic plasticity rules. Description: Soldado-Magraner, Saray, et al. Paradoxical self-sustained dynamics emerge from orchestrated excitatory and inhibitory homeostatic plasticity rules. ''Proc Natl Acad Sci U S A''. 2022 Oct 25; '''119''' (43):e2200621119 | |
| A neuron model with unbalanced synaptic weights explains the asymmetric effects of anaesthesia on the auditory cortex. Description: Lopez-Jury, Luciana, et al. A neuron model with unbalanced synaptic weights explains the asymmetric effects of anaesthesia on the auditory cortex. ''PLoS Biol''. 2023 Feb; '''21''' (2):e3002013 | |
| Mechanisms of Dominant Electrophysiological Features of Four Subtypes of Layer 1 Interneurons. Description: Meng, John Hongyu, et al. Mechanisms of Dominant Electrophysiological Features of Four Subtypes of Layer 1 Interneurons. ''J Neurosci''. 2023 May 3; '''43''' (18):3202-3218 | |
| Geometry of population activity in spiking networks with low-rank structure. Description: Cimesa, Ljubica, et al. Geometry of population activity in spiking networks with low-rank structure. ''PLoS Comput Biol''. 2023 Aug; '''19''' (8):e1011315 | |
| Flexible circuit mechanisms for context-dependent song sequencing. Description: Roemschied, Frederic A, et al. Flexible circuit mechanisms for context-dependent song sequencing. ''Nature''. 2023 Oct; '''622''' (7984):794-801 | |
| Active cortical networks promote shunting fast synaptic inhibition in vivo. Description: Burman, Richard J, et al. Active cortical networks promote shunting fast synaptic inhibition in vivo. ''Neuron''. 2023 Nov 15; '''111''' (22):3531-3540.e6 | |
| A prefrontal motor circuit initiates persistent movement. Description: Wang, Yihan, et al. A prefrontal motor circuit initiates persistent movement. ''Nat Commun''. 2024 Jun 19; '''15''' (1):5264 | |
| Bridging model and experiment in systems neuroscience with Cleo: the Closed-Loop, Electrophysiology, and Optophysiology simulation testbed. Description: Johnsen, Kyle A, et al. Bridging model and experiment in systems neuroscience with Cleo: the Closed-Loop, Electrophysiology, and Optophysiology simulation testbed. ''bioRxiv''. 2024 Jul 9; | |
| Balancing central control and sensory feedback produces adaptable and robust locomotor patterns in a spiking, neuromechanical model of the salamander spinal cord. Description: Pazzaglia, Alessandro, et al. Balancing central control and sensory feedback produces adaptable and robust locomotor patterns in a spiking, neuromechanical model of the salamander spinal cord. ''PLoS Comput Biol''. 2025 Jan; '''21''' (1):e1012101 | |
| Synaptic facilitation and learning of multiplexed neural signals. Description: Crook, Nigel, et al. Synaptic facilitation and learning of multiplexed neural signals. ''Front Netw Physiol''. 2025; '''5''': 1664280 | |
| Flexible control of motor units: is the multidimensionality of motor unit manifolds a sufficient condition? Description: Dernoncourt, Francois, et al. Flexible control of motor units: is the multidimensionality of motor unit manifolds a sufficient condition? ''J Physiol''. 2025 Apr; '''603''' (8):2349-2368 | |
| Modeling neuron-astrocyte interactions in neural networks using distributed simulation. Description: Jiang, Han-Jia, et al. Modeling neuron-astrocyte interactions in neural networks using distributed simulation. ''PLoS Comput Biol''. 2025 Sep; '''21''' (9):e1013503 | |
| Hierarchical Afferent Connectivity Drives Population-Wide Bursting Dynamics in a Computational Model of Human-Derived Excitatory Neuronal Networks. Description: Barabino, Valerio, et al. Hierarchical Afferent Connectivity Drives Population-Wide Bursting Dynamics in a Computational Model of Human-Derived Excitatory Neuronal Networks. ''J Neurosci''. 2026 Apr 29; '''46''' (17): | |
| A mean-field model of neural networks with PV and SOM interneurons reveals connectivity-based mechanisms of gamma oscillations. Description: Tahvili, Farzin, et al. A mean-field model of neural networks with PV and SOM interneurons reveals connectivity-based mechanisms of gamma oscillations. ''PLoS Comput Biol''. 2026 Jun; '''22''' (6):e1014378 | |
| Redundant prefrontal hemispheres adapt storage strategy to working memory demands. Description: Tschiersch, Melanie, et al. Redundant prefrontal hemispheres adapt storage strategy to working memory demands. ''Nat Commun''. 2026 Jul 20; '''17''' (1): | |
| Low-frequency tibial neuromodulation excites bladder activity in humans. Description: McConnell-Trevillion, Aidan, et al. Low-frequency tibial neuromodulation excites bladder activity in humans. ''Elife''. 2026 Sep 4; '''14''': |