NITRC: The Virtual Brain (TVB): PubMed Mentions: Display Document

PubMed Mentions

The links below are to publications on PubMed referring to The Virtual Brain (TVB). This list is gathered weekly from PubMed automatically and was last updated on February 28, 2026.

Publication/References
Hundreds of brain maps in one atlas: registering coordinate-independent primate neuro-anatomical data to a standard brain. Description: Bezgin, Gleb, et al. Hundreds of brain maps in one atlas: registering coordinate-independent primate neuro-anatomical data to a standard brain. ''Neuroimage''. 2012 Aug 1; '''62''' (1):67-76
Cross-frequency coupling in real and virtual brain networks. Description: Jirsa, Viktor, et al. Cross-frequency coupling in real and virtual brain networks. ''Front Comput Neurosci''. 2013; '''7''': 78
Intra- and inter-brain synchronization during musical improvisation on the guitar. Description: Muller, Viktor, et al. Intra- and inter-brain synchronization during musical improvisation on the guitar. ''PLoS One''. 2013; '''8''' (9):e73852
The Virtual Brain: a simulator of primate brain network dynamics. Description: Sanz Leon, Paula, et al. The Virtual Brain: a simulator of primate brain network dynamics. ''Front Neuroinform''. 2013; '''7''': 10
Spatiotemporal multi-resolution approximation of the Amari type neural field model. Description: Aram, P, et al. Spatiotemporal multi-resolution approximation of the Amari type neural field model. ''Neuroimage''. 2013 Feb 1; '''66''': 88-102
Mapping the dynamic repertoire of the resting brain. Description: Hadriche, Abir, et al. Mapping the dynamic repertoire of the resting brain. ''Neuroimage''. 2013 Sep; '''78''': 448-62
The history of CoCoMac. Description: Stephan, Klaas Enno. The history of CoCoMac. ''Neuroimage''. 2013 Oct 15; '''80''': 46-52
Integrating neuroinformatics tools in TheVirtualBrain. Description: Woodman, M Marmaduke, et al. Integrating neuroinformatics tools in TheVirtualBrain. ''Front Neuroinform''. 2014; '''8''': 36
Estimation of direct nonlinear effective connectivity using information theory and multilayer perceptron. Description: Khadem, Ali, et al. Estimation of direct nonlinear effective connectivity using information theory and multilayer perceptron. ''J Neurosci Methods''. 2014 May 30; '''229''': 53-67
Great expectations: using whole-brain computational connectomics for understanding neuropsychiatric disorders. Description: Deco, Gustavo, et al. Great expectations: using whole-brain computational connectomics for understanding neuropsychiatric disorders. ''Neuron''. 2014 Dec 3; '''84''' (5):892-905
TVB-EduPack-An Interactive Learning and Scripting Platform for The Virtual Brain. Description: Matzke, Henrik, et al. TVB-EduPack-An Interactive Learning and Scripting Platform for The Virtual Brain. ''Front Neuroinform''. 2015; '''9''': 27
Role of white-matter pathways in coordinating alpha oscillations in resting visual cortex. Description: Hindriks, R, et al. Role of white-matter pathways in coordinating alpha oscillations in resting visual cortex. ''Neuroimage''. 2015 Feb 1; '''106''': 328-39
Translational Perspectives for Computational Neuroimaging. Description: Stephan, Klaas E, et al. Translational Perspectives for Computational Neuroimaging. ''Neuron''. 2015 Aug 19; '''87''' (4):716-32
Building the Ferretome. Description: Sukhinin, Dmitrii I, et al. Building the Ferretome. ''Front Neuroinform''. 2016; '''10''': 16
Structure and Topology Dynamics of Hyper-Frequency Networks during Rest and Auditory Oddball Performance. Description: Muller, Viktor, et al. Structure and Topology Dynamics of Hyper-Frequency Networks during Rest and Auditory Oddball Performance. ''Front Comput Neurosci''. 2016; '''10''': 108
Selective Activation of Resting-State Networks following Focal Stimulation in a Connectome-Based Network Model of the Human Brain. Description: Spiegler, Andreas, et al. Selective Activation of Resting-State Networks following Focal Stimulation in a Connectome-Based Network Model of the Human Brain. ''eNeuro''. 2016 Sep-Oct; '''3''' (5):
Transcranial direct current stimulation changes resting state functional connectivity: A large-scale brain network modeling study. Description: Kunze, Tim, et al. Transcranial direct current stimulation changes resting state functional connectivity: A large-scale brain network modeling study. ''Neuroimage''. 2016 Oct 15; '''140''': 174-87
The Virtual Epileptic Patient: Individualized whole-brain models of epilepsy spread. Description: Jirsa, V K, et al. The Virtual Epileptic Patient: Individualized whole-brain models of epilepsy spread. ''Neuroimage''. 2017 Jan 15; '''145''' (Pt B):377-388
Differentiation of Alzheimer's disease based on local and global parameters in personalized Virtual Brain models. Description: Zimmermann, J, et al. Differentiation of Alzheimer's disease based on local and global parameters in personalized Virtual Brain models. ''Neuroimage Clin''. 2018; '''19''': 240-251
Annual Research Review: Not just a small adult brain: understanding later neurodevelopment through imaging the neonatal brain. Description: Batalle, Dafnis, et al. Annual Research Review: Not just a small adult brain: understanding later neurodevelopment through imaging the neonatal brain. ''J Child Psychol Psychiatry''. 2018 Apr; '''59''' (4):350-371
Linking Molecular Pathways and Large-Scale Computational Modeling to Assess Candidate Disease Mechanisms and Pharmacodynamics in Alzheimer's Disease. Description: Stefanovski, Leon, et al. Linking Molecular Pathways and Large-Scale Computational Modeling to Assess Candidate Disease Mechanisms and Pharmacodynamics in Alzheimer's Disease. ''Front Comput Neurosci''. 2019; '''13''': 54
Transmission time delays organize the brain network synchronization. Description: Petkoski, Spase, et al. Transmission time delays organize the brain network synchronization. ''Philos Trans A Math Phys Eng Sci''. 2019 Sep 9; '''377''' (2153):20180132
A Connectome-Based, Corticothalamic Model of State- and Stimulation-Dependent Modulation of Rhythmic Neural Activity and Connectivity. Description: Griffiths, John D, et al. A Connectome-Based, Corticothalamic Model of State- and Stimulation-Dependent Modulation of Rhythmic Neural Activity and Connectivity. ''Front Comput Neurosci''. 2020; '''14''': 575143
In silico exploration of mouse brain dynamics by focal stimulation reflects the organization of functional networks and sensory processing. Description: Spiegler, Andreas, et al. In silico exploration of mouse brain dynamics by focal stimulation reflects the organization of functional networks and sensory processing. ''Netw Neurosci''. 2020; '''4''' (3):807-851
Modeling the influence of the hippocampal memory system on the oculomotor system. Description: Ryan, Jennifer D, et al. Modeling the influence of the hippocampal memory system on the oculomotor system. ''Netw Neurosci''. 2020; '''4''' (1):217-233
Dynamical Mechanisms of Interictal Resting-State Functional Connectivity in Epilepsy. Description: Courtiol, Julie, et al. Dynamical Mechanisms of Interictal Resting-State Functional Connectivity in Epilepsy. ''J Neurosci''. 2020 Jul 15; '''40''' (29):5572-5588
Bridging Scales in Alzheimer's Disease: Biological Framework for Brain Simulation With The Virtual Brain. Description: Stefanovski, Leon, et al. Bridging Scales in Alzheimer's Disease: Biological Framework for Brain Simulation With The Virtual Brain. ''Front Neuroinform''. 2021; '''15''': 630172
Investigating the network consequences of focal brain lesions through comparisons of real and simulated lesions. Description: Tao, Yuan, et al. Investigating the network consequences of focal brain lesions through comparisons of real and simulated lesions. ''Sci Rep''. 2021 Jan 26; '''11''' (1):2213
On the influence of prior information evaluated by fully Bayesian criteria in a personalized whole-brain model of epilepsy spread. Description: Hashemi, Meysam, et al. On the influence of prior information evaluated by fully Bayesian criteria in a personalized whole-brain model of epilepsy spread. ''PLoS Comput Biol''. 2021 Jul; '''17''' (7):e1009129
Rare long-range cortical connections enhance human information processing. Description: Deco, Gustavo, et al. Rare long-range cortical connections enhance human information processing. ''Curr Biol''. 2021 Oct 25; '''31''' (20):4436-4448.e5
A Roadmap for Computational Modelling of M/EEG. Description: Franceschiello, Benedetta, et al. A Roadmap for Computational Modelling of M/EEG. ''Brain Topogr''. 2022 Jan; '''35''' (1):1-3
Altered synaptic plasticity at hippocampal CA1-CA3 synapses in Alzheimer's disease: integration of amyloid precursor protein intracellular domain and amyloid beta effects into computational models. Description: Dainauskas, Justinas J, et al. Altered synaptic plasticity at hippocampal CA1-CA3 synapses in Alzheimer's disease: integration of amyloid precursor protein intracellular domain and amyloid beta effects into computational models. ''Front Comput Neurosci''. 2023; '''17''': 1305169
Human Brain Project Partnering Projects Meeting: Status Quo and Outlook. Description: Lorents, Angeliki, et al. Human Brain Project Partnering Projects Meeting: Status Quo and Outlook. ''eNeuro''. 2023 Sep; '''10''' (9):
Hyper-brain hyper-frequency network topology dynamics when playing guitar in quartet. Description: Muller, Viktor, et al. Hyper-brain hyper-frequency network topology dynamics when playing guitar in quartet. ''Front Hum Neurosci''. 2024; '''18''': 1416667
Connectome-based reservoir computing with the conn2res toolbox. Description: Suarez, Laura E, et al. Connectome-based reservoir computing with the conn2res toolbox. ''Nat Commun''. 2024 Jan 22; '''15''' (1):656
Homeodynamic feedback inhibition control in whole-brain simulations. Description: Stasinski, Jan, et al. Homeodynamic feedback inhibition control in whole-brain simulations. ''PLoS Comput Biol''. 2024 Dec; '''20''' (12):e1012595
Capturing the emergent dynamical structure in biophysical neural models. Description: Milinkovic, Borjan, et al. Capturing the emergent dynamical structure in biophysical neural models. ''PLoS Comput Biol''. 2025 May; '''21''' (5):e1012572
An Interactive Brain Atlas of Knowledge. Description: Stefanovski, Leon, et al. An Interactive Brain Atlas of Knowledge. ''bioRxiv''. 2025 Dec 16;