Documents
Welcome to the collection of documents for Computational Morphometry Toolkit (CMTK).
Adding Documents: Members of Computational Morphometry Toolkit (CMTK) may submit documents to the folders below; however, an administrator will decide whether or not to publish a document.
Deleting Documents: If you find an out-dated document, please send a request to the tool/resource administrator.
| Add New Document |
| Folders/Documents | Add |
| ► Application Publications ( 23 ) | + |
| ► Developer Documentation ( 2 ) | + |
| ▼ PubMed Mentions ( 29 ) | + |
| Grid technology in tissue-based diagnosis: fundamentals and potential developments. Description: Gortler, Jurgen, et al. Grid technology in tissue-based diagnosis: fundamentals and potential developments. ''Diagn Pathol''. 2006 Aug 24; '''1''': 23 Updated: Dec 16, 2017 | |
| Dynamics of in silico leukocyte rolling, activation, and adhesion. Description: Tang, Jonathan, et al. Dynamics of in silico leukocyte rolling, activation, and adhesion. ''BMC Syst Biol''. 2007 Feb 19; '''1''': 14 Updated: Dec 16, 2017 | |
| Comparison of manual tracing versus a semiautomatic radial measurement method in temporal lobe MRI volumetry for pharmacoresistant epilepsy. Description: Mueller, Christian-Andreas, et al. Comparison of manual tracing versus a semiautomatic radial measurement method in temporal lobe MRI volumetry for pharmacoresistant epilepsy. ''Neuroradiology''. 2007 Mar; '''49''' (3):189-201 Updated: Dec 16, 2017 | |
| Offering to share: how to put heads together in autism neuroimaging. Description: Belmonte, Matthew K, et al. Offering to share: how to put heads together in autism neuroimaging. ''J Autism Dev Disord''. 2008 Jan; '''38''' (1):2-13 Updated: Dec 16, 2017 | |
| Matching spatial with ontological brain regions using Java tools for visualization, database access, and integrated data analysis. Description: Bezgin, Gleb, et al. Matching spatial with ontological brain regions using Java tools for visualization, database access, and integrated data analysis. ''Neuroinformatics''. 2009 Spring; '''7''' (1):7-22 Updated: Dec 16, 2017 | |
| MDL constrained 3-D grayscale skeletonization algorithm for automated extraction of dendrites and spines from fluorescence confocal images. Description: Yuan, Xiaosong, et al. MDL constrained 3-D grayscale skeletonization algorithm for automated extraction of dendrites and spines from fluorescence confocal images. ''Neuroinformatics''. 2009 Dec; '''7''' (4):213-32 Updated: Dec 16, 2017 | |
| Image-based modeling of blood flow and vessel wall dynamics: applications, methods and future directions: Sixth International Bio-Fluid Mechanics Symposium and Workshop, March 28-30, 2008 Pasadena, California. Description: Taylor, Charles A, et al. Image-based modeling of blood flow and vessel wall dynamics: applications, methods and future directions: Sixth International Bio-Fluid Mechanics Symposium and Workshop, March 28-30, 2008 Pasadena, California. ''Ann Biomed Eng''. 2010 Mar; '''38''' (3):1188-203 Updated: Dec 16, 2017 | |
| WebParc: a tool for analysis of the topography and volume of stroke from MRI. Description: Kennedy, David N, et al. WebParc: a tool for analysis of the topography and volume of stroke from MRI. ''Med Biol Eng Comput''. 2010 Mar; '''48''' (3):215-28 Updated: Dec 16, 2017 | |
| Systems microscopy approaches to understand cancer cell migration and metastasis. Description: Le Devedec, Sylvia E, et al. Systems microscopy approaches to understand cancer cell migration and metastasis. ''Cell Mol Life Sci''. 2010 Oct; '''67''' (19):3219-40 Updated: Dec 16, 2017 | |
| Automated MR morphometry to predict Alzheimer's disease in mild cognitive impairment. Description: Fritzsche, Klaus H, et al. Automated MR morphometry to predict Alzheimer's disease in mild cognitive impairment. ''Int J Comput Assist Radiol Surg''. 2010 Nov; '''5''' (6):623-32 Updated: Dec 16, 2017 | |
| Federated web-accessible clinical data management within an extensible neuroimaging database. Description: Ozyurt, I Burak, et al. Federated web-accessible clinical data management within an extensible neuroimaging database. ''Neuroinformatics''. 2010 Dec; '''8''' (4):231-49 Updated: Dec 16, 2017 | |
| Spontaneous brain activity observed with functional magnetic resonance imaging as a potential biomarker in neuropsychiatric disorders. Description: Zhou, Yuan, et al. Spontaneous brain activity observed with functional magnetic resonance imaging as a potential biomarker in neuropsychiatric disorders. ''Cogn Neurodyn''. 2010 Dec; '''4''' (4):275-94 Updated: Dec 16, 2017 | |
| The effect of angulation in abdominal aortic aneurysms: fluid-structure interaction simulations of idealized geometries. Description: Xenos, Michalis, et al. The effect of angulation in abdominal aortic aneurysms: fluid-structure interaction simulations of idealized geometries. ''Med Biol Eng Comput''. 2010 Dec; '''48''' (12):1175-90 Updated: Dec 16, 2017 | |
| Assessment of predictive models for chlorophyll-a concentration of a tropical lake. Description: Malek, Sorayya, et al. Assessment of predictive models for chlorophyll-a concentration of a tropical lake. ''BMC Bioinformatics''. 2011; '''12 Suppl 13''': S12 Updated: Dec 16, 2017 | |
| Pontocerebellar contribution to postural instability and psychomotor slowing in HIV infection without dementia. Description: Sullivan, Edith V, et al. Pontocerebellar contribution to postural instability and psychomotor slowing in HIV infection without dementia. ''Brain Imaging Behav''. 2011 Mar; '''5''' (1):12-24 Updated: Dec 16, 2017 | |
| The BrainMap strategy for standardization, sharing, and meta-analysis of neuroimaging data. Description: Laird, Angela R, et al. The BrainMap strategy for standardization, sharing, and meta-analysis of neuroimaging data. ''BMC Res Notes''. 2011 Sep 9; '''4''': 349 Updated: Dec 16, 2017 | |
| Maximum principal strain and strain rate associated with concussion diagnosis correlates with changes in corpus callosum white matter indices. Description: McAllister, Thomas W, et al. Maximum principal strain and strain rate associated with concussion diagnosis correlates with changes in corpus callosum white matter indices. ''Ann Biomed Eng''. 2012 Jan; '''40''' (1):127-40 Updated: Dec 16, 2017 | |
| XCEDE: an extensible schema for biomedical data. Description: Gadde, Syam, et al. XCEDE: an extensible schema for biomedical data. ''Neuroinformatics''. 2012 Jan; '''10''' (1):19-32 Updated: Dec 16, 2017 | |
| Do brain image databanks support understanding of normal ageing brain structure? A systematic review. Description: Dickie, David Alexander, et al. Do brain image databanks support understanding of normal ageing brain structure? A systematic review. ''Eur Radiol''. 2012 Jul; '''22''' (7):1385-94 Updated: Dec 16, 2017 | |
| A statistical framework for inter-group image registration. Description: Liao, Shu, et al. A statistical framework for inter-group image registration. ''Neuroinformatics''. 2012 Oct; '''10''' (4):367-78 Updated: Dec 16, 2017 | |
| System for integrated neuroimaging analysis and processing of structure. Description: Landman, Bennett A, et al. System for integrated neuroimaging analysis and processing of structure. ''Neuroinformatics''. 2013 Jan; '''11''' (1):91-103 Updated: Dec 16, 2017 | |
| Light microscopy applications in systems biology: opportunities and challenges. Description: Antony, Paul Michel Aloyse, et al. Light microscopy applications in systems biology: opportunities and challenges. ''Cell Commun Signal''. 2013 Apr 11; '''11''' (1):24 Updated: Dec 16, 2017 | |
| Towards automated detection of depression from brain structural magnetic resonance images. Description: Kipli, Kuryati, et al. Towards automated detection of depression from brain structural magnetic resonance images. ''Neuroradiology''. 2013 May; '''55''' (5):567-84 Updated: Dec 16, 2017 | |
| Comparative exploration of whole-body MR through locally rigid transforms. Description: Dzyubachyk, Oleh, et al. Comparative exploration of whole-body MR through locally rigid transforms. ''Int J Comput Assist Radiol Surg''. 2013 Jul; '''8''' (4):635-47 Updated: Dec 16, 2017 | |
| Three-dimensional histological specimen preparation for accurate imaging and spatial reconstruction of the middle and inner ear. Description: Rau, Thomas S, et al. Three-dimensional histological specimen preparation for accurate imaging and spatial reconstruction of the middle and inner ear. ''Int J Comput Assist Radiol Surg''. 2013 Jul; '''8''' (4):481-509 Updated: Dec 16, 2017 | |
| Contrast agent bolus dispersion in a realistic coronary artery geometry: influence of outlet boundary conditions. Description: Sommer, Karsten, et al. Contrast agent bolus dispersion in a realistic coronary artery geometry: influence of outlet boundary conditions. ''Ann Biomed Eng''. 2014 Apr; '''42''' (4):787-96 Updated: Dec 16, 2017 | |
| The perfect neuroimaging-genetics-computation storm: collision of petabytes of data, millions of hardware devices and thousands of software tools. Description: Dinov, Ivo D, et al. The perfect neuroimaging-genetics-computation storm: collision of petabytes of data, millions of hardware devices and thousands of software tools. ''Brain Imaging Behav''. 2014 Jun; '''8''' (2):311-22 Updated: Dec 16, 2017 | |
| SHERPA: an image segmentation and outline feature extraction tool for diatoms and other objects. Description: Kloster, Michael, et al. SHERPA: an image segmentation and outline feature extraction tool for diatoms and other objects. ''BMC Bioinformatics''. 2014 Jun 25; '''15''': 218 Updated: Dec 16, 2017 | |
| Intensity based methods for brain MRI longitudinal registration. A study on multiple sclerosis patients. Description: Diez, Yago, et al. Intensity based methods for brain MRI longitudinal registration. A study on multiple sclerosis patients. ''Neuroinformatics''. 2014 Jul; '''12''' (3):365-79 Updated: Dec 16, 2017 | |
| ► Technical Publications ( 4 ) | + |
| ► User Documentation ( 3 ) | + |