NITRC: Computational Morphometry Toolkit (CMTK): PubMed Mentions: Display Document

PubMed Mentions

The links below are to publications on PubMed referring to Computational Morphometry Toolkit (CMTK). This list is gathered weekly from PubMed automatically and was last updated on February 14, 2026.

Publication/References
A mutual information approach to automate identification of neuronal clusters in Drosophila brain images. Description: Masse, Nicolas Y, et al. A mutual information approach to automate identification of neuronal clusters in Drosophila brain images. ''Front Neuroinform''. 2012; '''6''': 21
A bidirectional circuit switch reroutes pheromone signals in male and female brains. Description: Kohl, Johannes, et al. A bidirectional circuit switch reroutes pheromone signals in male and female brains. ''Cell''. 2013 Dec 19; '''155''' (7):1610-23
Central neural circuitry mediating courtship song perception in male Drosophila. Description: Zhou, Chuan, et al. Central neural circuitry mediating courtship song perception in male Drosophila. ''Elife''. 2015 Sep 21; '''4''':
High-precision registration between zebrafish brain atlases using symmetric diffeomorphic normalization. Description: Marquart, Gregory D, et al. High-precision registration between zebrafish brain atlases using symmetric diffeomorphic normalization. ''Gigascience''. 2017 Aug 1; '''6''' (8):1-15
Whole-Brain Calcium Imaging Reveals an Intrinsic Functional Network in Drosophila. Description: Mann, Kevin, et al. Whole-Brain Calcium Imaging Reveals an Intrinsic Functional Network in Drosophila. ''Curr Biol''. 2017 Aug 7; '''27''' (15):2389-2396.e4
A profile of auditory-responsive neurons in the larval zebrafish brain. Description: Vanwalleghem, Gilles, et al. A profile of auditory-responsive neurons in the larval zebrafish brain. ''J Comp Neurol''. 2017 Oct 1; '''525''' (14):3031-3043
Luminance Changes Drive Directional Startle through a Thalamic Pathway. Description: Heap, Lucy A L, et al. Luminance Changes Drive Directional Startle through a Thalamic Pathway. ''Neuron''. 2018 Jul 25; '''99''' (2):293-301.e4
Threshold-Based Ordering of Sequential Actions during Drosophila Courtship. Description: McKellar, Claire E, et al. Threshold-Based Ordering of Sequential Actions during Drosophila Courtship. ''Curr Biol''. 2019 Feb 4; '''29''' (3):426-434.e6
Neural Evolution of Context-Dependent Fly Song. Description: Ding, Yun, et al. Neural Evolution of Context-Dependent Fly Song. ''Curr Biol''. 2019 Apr 1; '''29''' (7):1089-1099.e7
Layered roles of fruitless isoforms in specification and function of male aggression-promoting neurons in Drosophila. Description: Wohl, Margot, et al. Layered roles of fruitless isoforms in specification and function of male aggression-promoting neurons in Drosophila. ''Elife''. 2020 Apr 21; '''9''':
Sex-determining genes distinctly regulate courtship capability and target preference via sexually dimorphic neurons. Description: Ishii, Kenichi, et al. Sex-determining genes distinctly regulate courtship capability and target preference via sexually dimorphic neurons. ''Elife''. 2020 Apr 21; '''9''':
Controlling motor neurons of every muscle for fly proboscis reaching. Description: McKellar, Claire E, et al. Controlling motor neurons of every muscle for fly proboscis reaching. ''Elife''. 2020 Jun 25; '''9''':
Erasable labeling of neuronal activity using a reversible calcium marker. Description: Sha, Fern, et al. Erasable labeling of neuronal activity using a reversible calcium marker. ''Elife''. 2020 Sep 15; '''9''':
Classification and genetic targeting of cell types in the primary taste and premotor center of the adult Drosophila brain. Description: Sterne, Gabriella R, et al. Classification and genetic targeting of cell types in the primary taste and premotor center of the adult Drosophila brain. ''Elife''. 2021 Sep 2; '''10''':
Drosophila gustatory projections are segregated by taste modality and connectivity. Description: Engert, Stefanie, et al. Drosophila gustatory projections are segregated by taste modality and connectivity. ''Elife''. 2022 May 25; '''11''':
Excitatory nucleo-olivary pathway shapes cerebellar outputs for motor control. Description: Wang, Xiaolu, et al. Excitatory nucleo-olivary pathway shapes cerebellar outputs for motor control. ''Nat Neurosci''. 2023 Aug; '''26''' (8):1394-1406
Mitochondrial proteins encoded by the 22q11.2 neurodevelopmental locus regulate neural stem and progenitor cell proliferation. Description: Campbell, Philip D, et al. Mitochondrial proteins encoded by the 22q11.2 neurodevelopmental locus regulate neural stem and progenitor cell proliferation. ''Mol Psychiatry''. 2023 Sep; '''28''' (9):3769-3781
A modular circuit architecture coordinates the diversification of courtship strategies in Drosophila. Description: Coleman, Rory T, et al. A modular circuit architecture coordinates the diversification of courtship strategies in Drosophila. ''bioRxiv''. 2023 Sep 17;
Dimensionality reduction reveals separate translation and rotation populations in the zebrafish hindbrain. Description: Feierstein, Claudia E, et al. Dimensionality reduction reveals separate translation and rotation populations in the zebrafish hindbrain. ''Curr Biol''. 2023 Sep 25; '''33''' (18):3911-3925.e6
The preoptic area and dorsal habenula jointly support homeostatic navigation in larval zebrafish. Description: Palieri, Virginia, et al. The preoptic area and dorsal habenula jointly support homeostatic navigation in larval zebrafish. ''Curr Biol''. 2024 Feb 5; '''34''' (3):489-504.e7
Male cuticular pheromones stimulate removal of the mating plug and promote re-mating through pC1 neurons in Drosophila females. Description: Yun, Minsik, et al. Male cuticular pheromones stimulate removal of the mating plug and promote re-mating through pC1 neurons in Drosophila females. ''Elife''. 2024 Sep 10; '''13''':
Modulation of NMDA receptor signaling and zinc chelation prevent seizure-like events in a zebrafish model of SLC13A5 epilepsy. Description: Dogra, Deepika, et al. Modulation of NMDA receptor signaling and zinc chelation prevent seizure-like events in a zebrafish model of SLC13A5 epilepsy. ''PLoS Biol''. 2025 Apr; '''23''' (4):e3002499
Sexual dimorphism in the complete connectome of the Drosophila male central nervous system. Description: Berg, Stuart, et al. Sexual dimorphism in the complete connectome of the Drosophila male central nervous system. ''bioRxiv''. 2025 Oct 30;