Welcome to the collection of documents for Computational Morphometry Toolkit (CMTK).


Adding Documents: Members of Computational Morphometry Toolkit (CMTK) may submit documents to the folders below; however, an administrator will decide whether or not to publish a document.

Deleting Documents: If you find an out-dated document, please send a request to the tool/resource administrator.

Add a document
Show documents in: 
Folders/DocumentsAdd
Application Publications ( 23 )Add a document
document iconAccelerated aging of selective brain structures in human immunodeficiency virus infection: a controlled, longitudinal magnetic resonance imaging study.
Description: Pfefferbaum, Adolf, et al. Accelerated aging of selective brain structures in human immunodeficiency virus infection: a controlled, longitudinal magnetic resonance imaging study. ''Neurobiol Aging''. 2014 Jan 13;
Updated: Mar 19, 2014
document iconA mechanism of rapidly reversible cerebral ventricular enlargement independent of tissue atrophy.
Description: Zahr, Natalie M, et al. A mechanism of rapidly reversible cerebral ventricular enlargement independent of tissue atrophy. ''Neuropsychopharmacology''. 2013 May; '''38''' (6):1121-9
Updated: Mar 19, 2014
document iconA mutual information approach to automate identification of neuronal clusters in Drosophila brain images
Updated: Jul 16, 2012
document iconCerebral blood flow in posterior cortical nodes of the default mode network decreases with task engagement but remains higher than in most brain regions.
Description: Pfefferbaum, Adolf, et al. Cerebral blood flow in posterior cortical nodes of the default mode network decreases with task engagement but remains higher than in most brain regions. ''Cereb Cortex''. 2011 Jan; '''21''' (1):233-44
Updated: Aug 22, 2011
document iconChronic alcohol consumption and its effect on nodes of frontocerebellar and limbic circuitry: Comparison of effects in France and the United States.
Description: Le Berre, Anne-Pascale, et al. Chronic alcohol consumption and its effect on nodes of frontocerebellar and limbic circuitry: Comparison of effects in France and the United States. ''Hum Brain Mapp''. 2014 Mar 17;
Updated: Mar 19, 2014
document iconCombining atlas-based parcellation of regional brain data acquired across scanners at 1.5T and 3.0T field strengths
Description: Pfefferbaum A, et al. Combining atlas-based parcellation of regional brain data acquired across scanners at 1.5T and 3.0T field strengths. ''Neuroimage''. 2012 Jan 26;
Updated: Feb 3, 2012
document iconDevelopmental change in regional brain structure over 7 months in early adolescence: comparison of approaches for longitudinal atlas-based parcellation.
Description: Sullivan, Edith V, et al. Developmental change in regional brain structure over 7 months in early adolescence: comparison of approaches for longitudinal atlas-based parcellation. ''Neuroimage''. 2011 Jul 1; '''57''' (1):214-24
Updated: Aug 22, 2011
document iconIndependent contributions of cortical gray matter, aging, sex and alcoholism to K-complex amplitude evoked during sleep.
Description: Colrain, Ian M, et al. Independent contributions of cortical gray matter, aging, sex and alcoholism to K-complex amplitude evoked during sleep. ''Sleep''. 2011 Jun; '''34''' (6):787-95
Updated: Aug 22, 2011
document iconIn vivo glutamate measured with magnetic resonance spectroscopy: behavioral correlates in aging.
Description: Zahr, Natalie M, et al. In vivo glutamate measured with magnetic resonance spectroscopy: behavioral correlates in aging. ''Neurobiol Aging''. 2013 Apr; '''34''' (4):1265-76
Updated: Mar 19, 2014
document iconMonkeys that Voluntarily and Chronically Drink Alcohol Damage their Brains: a Longitudinal MRI Study.
Description: Kroenke, Christopher D, et al. Monkeys that Voluntarily and Chronically Drink Alcohol Damage their Brains: a Longitudinal MRI Study. ''Neuropsychopharmacology''. 2014 Mar; '''39''' (4):823-30
Updated: Mar 19, 2014
document iconMRI estimates of brain iron concentration in normal aging: comparison of field-dependent (FDRI) and phase (SWI) methods.
Description: Pfefferbaum, Adolf, et al. MRI estimates of brain iron concentration in normal aging: comparison of field-dependent (FDRI) and phase (SWI) methods. ''Neuroimage''. 2009 Aug 15; '''47''' (2):493-500
Updated: Aug 22, 2011
document iconMRI estimates of brain iron concentration in normal aging using quantitative susceptibility mapping
Description: Bilgic, Berkin, et al. MRI estimates of brain iron concentration in normal aging using quantitative susceptibility mapping. ''Neuroimage''. 2012 Feb 1; '''59''' (3):2625-35
Updated: Jan 12, 2012
document iconRat strain differences in brain structure and neurochemistry in response to binge alcohol.
Description: Zahr, Natalie M, et al. Rat strain differences in brain structure and neurochemistry in response to binge alcohol. ''Psychopharmacology (Berl)''. 2014 Jan; '''231''' (2):429-45
Updated: Mar 19, 2014
document iconRelevance of Iron Deposition in Deep Gray Matter Brain Structures to Cognitive and Motor Performance in Healthy Elderly Men and Women: Exploratory Findings.
Description: Sullivan EV, et al. Relevance of Iron Deposition in Deep Gray Matter Brain Structures to Cognitive and Motor Performance in Healthy Elderly Men and Women: Exploratory Findings. ''Brain Imaging Behav''. 2009 Jun 1; '''3''' (2):167-175
Updated: Aug 22, 2011
document iconSheet-like white matter fiber tracts: representation, clustering, and quantitative analysis
Description: Maddah, Mahnaz, et al. Sheet-like white matter fiber tracts: representation, clustering, and quantitative analysis. ''Med Image Comput Comput Assist Interv''. 2011; '''14''' (Pt 2):191-9
Updated: Jan 12, 2012
document iconThalamic volume deficit contributes to procedural and explicit memory impairment in HIV infection with primary alcoholism comorbidity.
Description: Fama, Rosemary, et al. Thalamic volume deficit contributes to procedural and explicit memory impairment in HIV infection with primary alcoholism comorbidity. ''Brain Imaging Behav''. 2014 Jan 14;
Updated: Mar 19, 2014
document iconThe INIA19 Template and NeuroMaps Atlas for Primate Brain Image Parcellation and Spatial Normalization.
Description: Rohlfing, Torsten, et al. The INIA19 Template and NeuroMaps Atlas for Primate Brain Image Parcellation and Spatial Normalization. ''Front Neuroinform''. 2012; '''6''': 27
Updated: Mar 19, 2014
document iconThe Locust Standard Brain: A 3D Standard of the Central Complex as a Platform for Neural Network Analysis.
Description: El Jundi, Basil, et al. The Locust Standard Brain: A 3D Standard of the Central Complex as a Platform for Neural Network Analysis. ''Front Syst Neurosci''. 2009; '''3''': 21
Updated: Aug 22, 2011
document iconThe SRI24 multichannel atlas of normal adult human brain structure.
Description: Rohlfing, Torsten, et al. The SRI24 multichannel atlas of normal adult human brain structure. ''Hum Brain Mapp''. 2010 May; '''31''' (5):798-819
Updated: Aug 22, 2011
document iconVariation in longitudinal trajectories of regional brain volumes of healthy men and women (ages 10 to 85 years) measured with atlas-based parcellation of MRI.
Description: Pfefferbaum, Adolf, et al. Variation in longitudinal trajectories of regional brain volumes of healthy men and women (ages 10 to 85 years) measured with atlas-based parcellation of MRI. ''Neuroimage''. 2013 Jan 15; '''65''': 176-93
Updated: Mar 19, 2014
document iconVisual search and the aging brain: discerning the effects of age-related brain volume shrinkage on alertness, feature binding, and attentional control
Description: Muller-Oehring, Eva M, et al. Visual search and the aging brain: discerning the effects of age-related brain volume shrinkage on alertness, feature binding, and attentional control. ''Neuropsychology''. 2013 Jan; '''27''' (1):48-59
Updated: Jun 4, 2013
document iconVolumetric cerebral perfusion imaging in healthy adults: regional distribution, laterality, and repeatability of pulsed continuous arterial spin labeling (PCASL).
Description: Pfefferbaum, Adolf, et al. Volumetric cerebral perfusion imaging in healthy adults: regional distribution, laterality, and repeatability of pulsed continuous arterial spin labeling (PCASL). ''Psychiatry Res''. 2010 Jun 30; '''182''' (3):266-73
Updated: Aug 22, 2011
document iconWhole-Brain Activity Maps Reveal Stereotyped, Distributed Networks for Visuomotor Behavior
Updated: Mar 19, 2014
Developer Documentation ( 2 )Add a document
Technical Publications ( 4 )Add a document
User Documentation ( 3 )Add a document