Execution Options
MethodOption 
Download and run 
 A_Adult_96x92.mat 
 A_AdultV24x28.mat 
 Age_Specific_Atlases.zip 
 A_Glasgow_LUMO_motor_onHD_Mesh0_cropped2data.mat 
 AlignMe.zip 
 A_LUMO_51_tile_on_participant_mesh_r3dlt50mm.mat 
 Basic_GLM_Tutorial.zip 
 Basic_Light_Modeling_with_AlignMe.zip 
 Basic_Light_Modeling_with_Hummingbird.zip 
 Basic_Light_Modeling_with_Sparse_Pad_and_AlignMe.zip 
 Basic_Light_Modeling_with_Sparse_Pad_and_Hummingbird.zip 
 Basic_ParcelBased_Functional_Connectivity_Tutorial.zip 
 Eggebrecht_et_al_2012_Retinotopy_mat.zip 
 Eggebrecht_et_al_2012_Retinotopy_SNIRF.zip 
 E.mat 
 Fogarty_Rafferty_Imag_Neurosci_2025_Release_Amats.zip 
 Fogarty_Rafferty_Imag_Neurosci_2025_Release_DOT.zip 
 Fogarty_Rafferty_Imag_Neurosci_2025_Release_MRI.zip 
 FOV_LUMO_51_tile_on_particpant_mesh_r3dlt50mm.mat 
 Full_Data_Processing.zip 
 Generating_a_Pad_File.zip 
 Getting_Started.zip 
 Glasgow_Light_Modeling_Motor_260317.m 
 GoodVox3mm.mat 
 Hands_On_Processing_with_NIRFASTer_and_NeuroDOT.pptx 
 HD_mesh_with_relaxed_optodes.mat 
 Image_Reconstruction.zip 
 Latest NeuroDOT Release with Updates 
 Loading_Raw_Data.zip 
 make_GLM_maps_260313_AS.m 
 make_GLM_maps_260313_Glasgow_data_AS.m 
 Markow_Trobaugh_Richter_et_al_Sci_Rep_2025_Release.zip 
 ND_LUMO_Data_Sample_AC001.mat 
 ND_LUMO_Data_Sample_CCW001.mat 
 ND_LUMO_Data_Sample_GV001.mat 
 ND_LUMO_Data_Sample_HW001.mat 
 ND_LUMO_Data_Sample_MOT001.mat 
 NeuroDOT_Data_Samples_SNIRF.zip 
 NeuroDOT_Full_Processing_Script_Glasgow.m 
 NeuroDOT_Full_Processing_Script_Glasgow_with_Glasgow_data.m 
 NeuroDOT_Light_Model_Generation_Script_Glasgow_260317.m 
 NeuroDOT_Newsletter_250207.pdf 
 NeuroDOT_Newsletter_250523.pdf 
 NeuroDOT_Newsletter_251202.pdf 
 NeuroDOT_Newsletter_May_2026.pdf 
 NeuroDOT_py 
 NeuroDOT_Py (v1.3.0) 
 NeuroDOT_Resting_State_mat_Subj1-4.zip 
 NeuroDOT_Resting_State_mat_Subj5-9.zip 
 NeuroDOT_Resting_State_SNIRF_Subj1-4.zip 
 NeuroDOT_Resting_State_SNIRF_Subj5-9.zip 
 NeuroDOT_Visualization_Script_Glasgow.m 
 NeuroDOT_workshop_sfNIRS_2022.m 
 Pad_Glasgow_LUMO_motor.mat 
 params.txt 
 Preparation_for_NeuroDOT_Workshop_sfNIRS_2022.pdf 
 Preparation_for_PreProcessing_and_Data_Analysis_Workshop.pdf 
 Prerequisites_for_NeuroDOT_and_NIRFAST_Workshop_sfNIRS_2024.pdf 
 Python_Basic_GLM_Tutorial.zip 
 Python_Basic_ParcelBased_Functional_Connectivity_Tutorial.zip 
 readme_Age_Specific_Head_Atlases.txt 
 README.txt 
 README.txt 
 README.txt 
 README.txt 
 README.txt 
 README.txt 
 README.txt 
 README.txt 
 Release TAR Ball 
 Release TAR Ball 
 Release TAR Ball 
 Release TAR Ball 
 Release TAR Ball 
 Release TAR Ball 
 Release TAR Ball 
 Release TAR Ball 
 Release TAR Ball 
 Release ZIP Ball 
 Release ZIP Ball 
 Release ZIP Ball 
 Release ZIP Ball 
 Release ZIP Ball 
 Release ZIP Ball 
 Release ZIP Ball 
 Release ZIP Ball 
 Release ZIP Ball 
 Running_Containers_on_XNAT_Tutorial.pdf 
 Schroeder_et_al_2023_Language_Production 
 SfNIRS_24_Example_Data.zip 
 SfNIRS_24_Materials.zip 
 SfNIRS_24_Scripts.zip 
 sfNIRS_NeuroDOT_workshop_additional_variables.mat 
 Strathclyde_LUMO_Preprocessing_Hands_On.m 
 Strathclyde_MOT_data.mat 
 Tripathy_Fogarty_HBM_45_e26684_subj-A01 
 Tripathy_Fogarty_HBM_45_e26684_subj-A02 
 Tripathy_Fogarty_HBM_45_e26684_subj-A03 
 Tripathy_Fogarty_HBM_45_e26684_subj-A04 
 Tripathy_Fogarty_HBM_45_e26684_subj-A05 
 Tripathy_Markow_Neurophoton_12_015002_subj-A01 
 Tripathy_Markow_Neurophoton_12_015002_subj-A02 
 Tripathy_Markow_Neurophoton_12_015002_subj-A04 
 Visualization_Overview.zip