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Mar 17, 2021 09:03 PM | Evan Cresswell-Clay - Basque Center for Applied Mathematics
Comparing two .SWC Morphologies
I am a new user and enjoying Vaa3D very much. I do have a question
which would really help focus my investigation of the
softwar.
Give 2 or more cell morphologies (.SWC format), what are the tools available to compare/contrast morphological features?
Give 2 or more cell morphologies (.SWC format), what are the tools available to compare/contrast morphological features?
Mar 17, 2021 10:03 PM | Hanchuan Peng
RE: Comparing two .SWC Morphologies
check this paper for answers, many features can be used....
Blastneuron for automated comparison, retrieval and clustering of 3d neuron morphologies"
Wan, Y., Long, F., Qu, L., Xiao, H., Hawrylycz, M., Myers, E., Peng, H.,
NeuroInformatics,
DOI 10.1007/s12021-015-9272-7, 2015.
http://home.penglab.com/papersall/docpdf...
Originally posted by Evan Cresswell-Clay:
Blastneuron for automated comparison, retrieval and clustering of 3d neuron morphologies"
Wan, Y., Long, F., Qu, L., Xiao, H., Hawrylycz, M., Myers, E., Peng, H.,
NeuroInformatics,
DOI 10.1007/s12021-015-9272-7, 2015.
http://home.penglab.com/papersall/docpdf...
Originally posted by Evan Cresswell-Clay:
I am a new user and enjoying Vaa3D very much. I
do have a question which would really help focus my investigation
of the softwar.
Give 2 or more cell morphologies (.SWC format), what are the tools available to compare/contrast morphological features?
Give 2 or more cell morphologies (.SWC format), what are the tools available to compare/contrast morphological features?
Mar 17, 2021 10:03 PM | Evan Cresswell-Clay - Basque Center for Applied Mathematics
RE: Comparing two .SWC Morphologies
Thank you for your quick reply. Unfortunately I do not have
Blastneuron on my current version of Vaa3D. There is an option for
Blastneuron but the plugin drop-down (attached png) only lists the
about. I may have to connect the plugin somehow but I haven't found
and documentation on it. Is there an available binary which
would include it?
I'm currently using the following: https://github.com/Vaa3D/release/releases/download/v3.200/Vaa3D_Ubuntu_64bit_v3.200.tar.gz
I tried building Vaa3d from the github page as well (https://github.com/Vaa3D/Vaa3D_Wiki/wiki...) but the instructions are a bit out of date for my system.
I'm running Ubuntu 20.04..
I'm currently using the following: https://github.com/Vaa3D/release/releases/download/v3.200/Vaa3D_Ubuntu_64bit_v3.200.tar.gz
I tried building Vaa3d from the github page as well (https://github.com/Vaa3D/Vaa3D_Wiki/wiki...) but the instructions are a bit out of date for my system.
I'm running Ubuntu 20.04..