Vaa3D and Vaa3D-Neuron

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Vaa3D (3D Visualization-Assisted Analysis) is a handy, fast, and versatile 3D/4D/5D Image Visualization & Analysis System for Bioimages & Surface Objects. Vaa3D is a cross-platform (Mac, Linux, and Windows) tool for visualizing large-scale (gigabytes, and 64-bit data) 3D/4D/5D image stacks and various surface data. It is also a container of powerful modules for 3D image analysis (cell segmentation, neuron tracing, brain registration, annotation, quantitative measurement and statistics, etc) and data management.



Vaa3D is very easy to be extended via a powerful plugin interface. For example, many ITK tools are being converted to Vaa3D Plugins.

Vaa3D-Neuron is built upon Vaa3D to make 3D neuron reconstruction much easier. In a recent Nature Biotechnology paper (2010, 28(4), pp.348-353) about Vaa3D and Vaa3D-Neuron, an order of magnitude of performance improvement (both reconstruction accuracy and speed) was achieved compared to other tools.

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Specifications

Category:
Algorithm or Reusable Library, Atlas Application, Neuronal Characterization, Position, Volumetric Analysis, Segmentation, Shape Analysis, Registration, Resampling, Warping, Surface Analysis, Fiber Tracking, Image Display, Rendering, Platform or Development Environment
Development Status:
5 - Production/Stable/Mature
Diagnosis:
Depression, Parkinson Disease
Domain:
Computational Neuroscience, Imaging Genomics, MR
Environment:
Other Environment, Win32 (MS Windows), Gnome, KDE
Intended Audience:
Developers, End Users, Other Audience
Natural Language:
English
Operating System:
MacOS, Windows 95/98/2000, Windows NT/2000, Windows Vista, Windows XP, Cygwin, Linux
Programming Language:
C, C++
Supported Data Format:
Other Format

Associations

can be extended by:
Insight Toolkit
works well with:
Insight Toolkit

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NeuroLex ID: nlx_156012

RRID: SCR_002609

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Registered: Jun 3, 2010

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