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open-discussion > Calculating counts from ROIs (Mouse Suite)
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Jul 30, 2012 03:07 PM | Wawrzyniec Dobrucki
Calculating counts from ROIs (Mouse Suite)
I am following the Mouse Suite guide (chapter 25 in the manual) to
calculate SPECT counts from ROIs defined on CT image.
In the manual it states that to compute ROI statistics (section 25.7, p.285):
Unfortunately, I cannot find Compute ROI Stats in BioImage Suite 3.2.
Is there any other way to calculate the ROI stats in the Mouse Suite module?
Thank you,
Wawosz
In the manual it states that to compute ROI statistics (section 25.7, p.285):
6. Choose Registration, then Transformation from
the left drop down menu, located in the
BioImage:: Suite Mouse Register window. A Registration/Overlay Tool box appears.
7. Click Compute ROI Stats.
BioImage:: Suite Mouse Register window. A Registration/Overlay Tool box appears.
7. Click Compute ROI Stats.
Unfortunately, I cannot find Compute ROI Stats in BioImage Suite 3.2.
Is there any other way to calculate the ROI stats in the Mouse Suite module?
Thank you,
Wawosz
Aug 7, 2012 05:08 PM | Xenophon Papademetris
Calculating counts
from ROIs (Mouse Suite)
Wawoz,
The way to do this is as follows.
1. Load the SPECT image into the transform viewer
2. Load the ROI map in the transform viewer as the "objectmap", from the Objectmap menu.
3. Under objectmap menu, find "Compute VOI Stats"
Xenios
The way to do this is as follows.
1. Load the SPECT image into the transform viewer
2. Load the ROI map in the transform viewer as the "objectmap", from the Objectmap menu.
3. Under objectmap menu, find "Compute VOI Stats"
Xenios
Aug 8, 2012 07:08 AM | Wawrzyniec Dobrucki
RE: Calculating counts from ROIs (Mouse Suite)
Originally posted by Xenophon Papademetris:
Xenios,
thank you for this tip. It is unfortunate however, that there is no objectmap menu in the transform viewer when using Mouse Suite. I need to do this by using General -> Brain Register which is confusing, especially when working with mouse hindlimb data.
Regards,
Wawosz
Wawoz,
The way to do this is as follows.
1. Load the SPECT image into the transform viewer
2. Load the ROI map in the transform viewer as the "objectmap", from the Objectmap menu.
3. Under objectmap menu, find "Compute VOI Stats"
Xenios
The way to do this is as follows.
1. Load the SPECT image into the transform viewer
2. Load the ROI map in the transform viewer as the "objectmap", from the Objectmap menu.
3. Under objectmap menu, find "Compute VOI Stats"
Xenios
Xenios,
thank you for this tip. It is unfortunate however, that there is no objectmap menu in the transform viewer when using Mouse Suite. I need to do this by using General -> Brain Register which is confusing, especially when working with mouse hindlimb data.
Regards,
Wawosz