help > Possible to just preprocess?
Jan 20, 2015  08:01 PM | Jamie Hanson
Possible to just preprocess?
Hello Dr. Spielberg and colleagues,

I was interested in using GTG for just pre-processing (a colleague has a novel network detection algorithm I was trying to use). Would that be possible in GTG? I tried to input a resting state scan and a whole brain mask (for both the whole brain mask and ROI mask). I however ran into some errors. 

After clicking the preprocess button, I enter a vector for participant ID (Subjects={'2011031012401','2011031012401_rest.nii.gz'};), ROI labels (Mask={'WholeBrain','2011031012401_rest_mask.nii.gz'};), change the # of slices and TR, and select the appropriate files. I next click motion censoring (just for my piloting). I however get the following error:

>> METAlab_GTG
Warning: matlabpool will be removed in a future release.
To query the size of an already started parallel pool, query the 'NumWorkers' property of the pool.
To check if a pool is already started use 'isempty(gcp('nocreate'))'.
Error using dlmread (line 61)
The file ' ' could not be opened because: No such file or directory
Error in METAlab_GTG_preprocess_GUI>preprocess_for_graph (line 1683)
mot_pred = dlmread(par_filename);
Error in METAlab_GTG_preprocess_GUI>Start_pushbutton_Callback (line 1233)
[out.ts{currsub,1},out.num_censored_vols(currsub,1),out.num_censored_vols_FD(currsub,1),out.num_censored_vols_DVARS(currsub,1),out.GCOR(currsub,1),out.mean_FD(currsub,1),out.mean_DVARS(currsub,1)]
=
preprocess_for_graph(out,sub,logfile_fid,img_ext,func_filename,parc_filename,funcmask_filename,WM_filename,vent_filename,parc_warp_filename,WM_warp_filename,vent_warp_filename,par_filename);
Error in gui_mainfcn (line 95)
feval(varargin{:});
Error in METAlab_GTG_preprocess_GUI (line 80)
gui_mainfcn(gui_State, varargin{:});
Error in
@(hObject,eventdata)METAlab_GTG_preprocess_GUI('Start_pushbutton_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating UIControl Callback

I'm using Matlab2014b; any thoughts on what I might have done wrong?
Any suggestions are greatly appreciated! I attached my preprocessing log (which says I'm missing files for the participant, but that file exist, etc.). Does GTG want individual (non-stacked/indexed) files?

Thanks much!
Jamie.

Threaded View

TitleAuthorDate
Possible to just preprocess?
Jamie Hanson Jan 20, 2015
Jamie Hanson Jan 25, 2015
Jamie Hanson Jan 23, 2015
Jeffrey Spielberg Jan 23, 2015
Jamie Hanson Jan 23, 2015
Jeffrey Spielberg Jan 23, 2015
Jamie Hanson Jan 23, 2015
Jeffrey Spielberg Jan 23, 2015
Jamie Hanson Jan 23, 2015
Jeffrey Spielberg Jan 23, 2015
Jamie Hanson Jan 23, 2015
Jeffrey Spielberg Jan 23, 2015
Jeffrey Spielberg Jan 23, 2015