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help > RE: Streamline tracking in multi-tensor DTI
Dec 23, 2009 08:12 PM | Philip Cook
RE: Streamline tracking in multi-tensor DTI
Hi,
Please try the following test
cd camino
track -inputmodel multitensor -inputfile test/tracking/crossing/crossing_05_0505_90.snr20.Bdouble.gz -seedfile test/tracking/crossing/rois/crossing_multi_roi.hdr > results.Bfloat
This uses some test data to do tracking with multitensor. It doesn't crash for me. Are you sure your input file is the right size? For two components, it should be
17 * 8 * N
bytes, where there are N voxels in the image. I normally name multitensor output according to the number of components.
Re: FA, there isn't a simple way to get the image in the multitensor case. I normally just run a standard tensor reconstruction and use that FA, because the multitensor FA is often quite unstable. I don't know if there's a generally accepted way to define an average voxel FA from a linear combination of tensors.
Please try the following test
cd camino
track -inputmodel multitensor -inputfile test/tracking/crossing/crossing_05_0505_90.snr20.Bdouble.gz -seedfile test/tracking/crossing/rois/crossing_multi_roi.hdr > results.Bfloat
This uses some test data to do tracking with multitensor. It doesn't crash for me. Are you sure your input file is the right size? For two components, it should be
17 * 8 * N
bytes, where there are N voxels in the image. I normally name multitensor output according to the number of components.
Re: FA, there isn't a simple way to get the image in the multitensor case. I normally just run a standard tensor reconstruction and use that FA, because the multitensor FA is often quite unstable. I don't know if there's a generally accepted way to define an average voxel FA from a linear combination of tensors.
Threaded View
| Title | Author | Date |
|---|---|---|
| Torsten Rohlfing | Dec 21, 2009 | |
| Philip Cook | Dec 21, 2009 | |
| Torsten Rohlfing | Dec 23, 2009 | |
| Philip Cook | Dec 23, 2009 | |
| Torsten Rohlfing | Dec 23, 2009 | |
| Philip Cook | Dec 24, 2009 | |
| Torsten Rohlfing | Dec 24, 2009 | |
| Torsten Rohlfing | Dec 24, 2009 | |
