open-discussion
open-discussion > RE: DWIConvert
Apr 2, 2018 08:04 PM | Daniel Berge - Hospital del Mar Medical Research Institute (IMIM)
RE: DWIConvert
Hi, just an idea,
Try specifying the exact path where your latest version of Slicer is and add "./" before Slicer (ie: /whateverpath/Slicer-4.8somethingelse/./Slicer --launch DWIConvert.....).
Just in case you haven't done it yet.
Originally posted by Micah Johnson:
Try specifying the exact path where your latest version of Slicer is and add "./" before Slicer (ie: /whateverpath/Slicer-4.8somethingelse/./Slicer --launch DWIConvert.....).
Just in case you haven't done it yet.
Originally posted by Micah Johnson:
Hi there, I'm using linux, and I'm having
trouble running Slicer from my bash script.sh, it gives me the
error message, when trying to run DWIConvert, that "--launch:
command not found", which is very strange, because the exact same
code works correctly when I type it into the terminal.
Any ideas?
Much appreciated!
Micah
Originally posted by Martin Styner:
Any ideas?
Much appreciated!
Micah
Originally posted by Martin Styner:
Hi Jacek
Does the nrrd file look okay when loaded in Slicer or DTIPrep? If so, then at least you have found a workaround. Which is surprising as DicomToNrrdConverter is basically the same as DWIConvert (DWIConvert is a newer version of DicomToNrrdConverter).
Re calling this on the command line: Yes, most Slicer modules have a command line interface. Not sure about how to do that in Windows (this is really a question for the Slicer user-list), but in Linux you can find all built-in modules in the folder /lib/Slicer-/cli-modules . You can also call (again in Linux) Slicer --launch e.g. Slicer --launch DicomToNrrdConverter
Martin
Does the nrrd file look okay when loaded in Slicer or DTIPrep? If so, then at least you have found a workaround. Which is surprising as DicomToNrrdConverter is basically the same as DWIConvert (DWIConvert is a newer version of DicomToNrrdConverter).
Re calling this on the command line: Yes, most Slicer modules have a command line interface. Not sure about how to do that in Windows (this is really a question for the Slicer user-list), but in Linux you can find all built-in modules in the folder /lib/Slicer-/cli-modules . You can also call (again in Linux) Slicer --launch e.g. Slicer --launch DicomToNrrdConverter
Martin
Threaded View
| Title | Author | Date |
|---|---|---|
| Jacek M | Apr 8, 2016 | |
| Micah Johnson | Mar 22, 2018 | |
| Daniel Berge | Mar 22, 2018 | |
| Micah Johnson | Mar 22, 2018 | |
| Daniel Berge | Mar 22, 2018 | |
| Martin Styner | Mar 22, 2018 | |
| Micah Johnson | Mar 22, 2018 | |
| Micah Johnson | Mar 22, 2018 | |
| Daniel Berge | Mar 22, 2018 | |
| Micah Johnson | Mar 22, 2018 | |
| Daniel Berge | Mar 22, 2018 | |
| Micah Johnson | Mar 22, 2018 | |
| Micah Johnson | Mar 22, 2018 | |
| Ryan H | Jan 23, 2018 | |
| Martin Styner | Jan 26, 2018 | |
| Ryan H | Jan 26, 2018 | |
| Martin Styner | Jan 26, 2018 | |
| Ryan H | Jan 26, 2018 | |
| Martin Styner | Jan 26, 2018 | |
| Ryan H | Jan 26, 2018 | |
| Martin Styner | Jan 29, 2018 | |
| Ryan H | Jan 29, 2018 | |
| Martin Styner | Jan 30, 2018 | |
| Ryan H | Jan 30, 2018 | |
| Martin Styner | Jan 31, 2018 | |
| Ryan H | Feb 2, 2018 | |
| Martin Styner | Feb 19, 2018 | |
| Ryan H | Feb 19, 2018 | |
| Martin Styner | Feb 21, 2018 | |
| Ryan H | Jan 31, 2018 | |
| Maike Kleemeyer | Jan 10, 2018 | |
| Martin Styner | Jan 10, 2018 | |
| Maike Kleemeyer | Jan 11, 2018 | |
| Martin Styner | Jan 11, 2018 | |
| Maike Kleemeyer | Jan 15, 2018 | |
| Martin Styner | Jan 17, 2018 | |
| Maike Kleemeyer | Jan 18, 2018 | |
| Martin Styner | Jan 18, 2018 | |
| Marie Drottar | Jun 7, 2016 | |
| Jacek M | Apr 27, 2016 | |
| Martin Styner | Apr 27, 2016 | |
| Jacek M | Apr 15, 2016 | |
| Martin Styner | Apr 15, 2016 | |
| Micah Johnson | Mar 27, 2018 | |
| Daniel Berge | Apr 2, 2018 | |
| Micah Johnson | Apr 2, 2018 | |
| Juan Prieto | Apr 8, 2016 | |
| Jacek M | Apr 13, 2016 | |
| Martin Styner | Apr 13, 2016 | |
| Jacek M | Apr 13, 2016 | |
| Martin Styner | Apr 8, 2016 | |