questions
questions > problems in creating Bvec file
Apr 17, 2018 03:04 PM | Xinman Liu
problems in creating Bvec file
Hello, everyone,
I'm new to use dcm2nii, and I have run it with two data files. One work pretty well, but the other did not seem to work out. And I cannot figure out what is wrong with it. Could anyone help?
So, with the data that did not work out, it show as follows,
Chris Rorden's dcm2nii :: 2MAY2016 64bit BSD License :: (upgrade to dcm2niix suggested)
reading preferences file F:\NITRC-mricron-Downloads\mricron\dcm2niigui.ini
Chris Rorden's dcm2nii :: 2MAY2016 64bit BSD License :: (upgrade to dcm2niix suggested)
Converting F:\V1
Data will be exported to F:\V1
Validating 85 potential DICOM images.
FFFE,E000,Image Fragment [0@114500]=0 Offset114500 Length0
FFFE,E000,Image Fragment [0@114518]=0 Offset114518 Length0
FFFE,E000,Image Fragment [0@114502]=0 Offset114502 Length0
FFFE,E000,Image Fragment [0@114508]=0 Offset114508 Length0
FFFE,E000,Image Fragment [0@114514]=0 Offset114514 Length0
FFFE,E000,Image Fragment [0@114518]=0 Offset114518 Length0
FFFE,E000,Image Fragment [0@114520]=0 Offset114520 Length0
FFFE,E000,Image Fragment [0@114510]=0 Offset114510 Length0
FFFE,E000,Image Fragment [0@114516]=0 Offset114516 Length0
FFFE,E000,Image Fragment [0@114510]=0 Offset114510 Length0
FFFE,E000,Image Fragment [0@114090]=0 Offset114090 Length0
FFFE,E000,Image Fragment [0@114520]=0 Offset114520 Length0
FFFE,E000,Image Fragment [0@114518]=0 Offset114518 Length0
FFFE,E000,Image Fragment [0@114096]=0 Offset114096 Length0
FFFE,E000,Image Fragment [0@114510]=0 Offset114510 Length0
FFFE,E000,Image Fragment [0@114516]=0 Offset114516 Length0
FFFE,E000,Image Fragment [0@114518]=0 Offset114518 Length0
FFFE,E000,Image Fragment [0@114512]=0 Offset114512 Length0
FFFE,E000,Image Fragment [0@114510]=0 Offset114510 Length0
FFFE,E000,Image Fragment [0@114516]=0 Offset114516 Length0
FFFE,E000,Image Fragment [0@114518]=0 Offset114518 Length0
FFFE,E000,Image Fragment [0@114486]=0 Offset114486 Length0
FFFE,E000,Image Fragment [0@114516]=0 Offset114516 Length0
FFFE,E000,Image Fragment [0@114514]=0 Offset114514 Length0
FFFE,E000,Image Fragment [0@114508]=0 Offset114508 Length0
FFFE,E000,Image Fragment [0@114506]=0 Offset114506 Length0
FFFE,E000,Image Fragment [0@114516]=0 Offset114516 Length0
FFFE,E000,Image Fragment [0@114518]=0 Offset114518 Length0
FFFE,E000,Image Fragment [0@114516]=0 Offset114516 Length0
FFFE,E000,Image Fragment [0@114506]=0 Offset114506 Length0
FFFE,E000,Image Fragment [0@114516]=0 Offset114516 Length0
FFFE,E000,Image Fragment [0@114510]=0 Offset114510 Length0
FFFE,E000,Image Fragment [0@114502]=0 Offset114502 Length0
FFFE,E000,Image Fragment [0@114512]=0 Offset114512 Length0
FFFE,E000,Image Fragment [0@114506]=0 Offset114506 Length0
FFFE,E000,Image Fragment [0@114496]=0 Offset114496 Length0
FFFE,E000,Image Fragment [0@114098]=0 Offset114098 Length0
FFFE,E000,Image Fragment [0@114498]=0 Offset114498 Length0
FFFE,E000,Image Fragment [0@114506]=0 Offset114506 Length0
FFFE,E000,Image Fragment [0@114516]=0 Offset114516 Length0
FFFE,E000,Image Fragment [0@114508]=0 Offset114508 Length0
FFFE,E000,Image Fragment [0@114518]=0 Offset114518 Length0
FFFE,E000,Image Fragment [0@114518]=0 Offset114518 Length0
FFFE,E000,Image Fragment [0@114506]=0 Offset114506 Length0
FFFE,E000,Image Fragment [0@114518]=0 Offset114518 Length0
FFFE,E000,Image Fragment [0@114514]=0 Offset114514 Length0
FFFE,E000,Image Fragment [0@114502]=0 Offset114502 Length0
FFFE,E000,Image Fragment [0@114518]=0 Offset114518 Length0
FFFE,E000,Image Fragment [0@114514]=0 Offset114514 Length0
FFFE,E000,Image Fragment [0@114516]=0 Offset114516 Length0
FFFE,E000,Image Fragment [0@114520]=0 Offset114520 Length0
FFFE,E000,Image Fragment [0@114520]=0 Offset114520 Length0
FFFE,E000,Image Fragment [0@114518]=0 Offset114518 Length0
FFFE,E000,Image Fragment [0@114514]=0 Offset114514 Length0
FFFE,E000,Image Fragment [0@114502]=0 Offset114502 Length0
FFFE,E000,Image Fragment [0@114520]=0 Offset114520 Length0
FFFE,E000,Image Fragment [0@114516]=0 Offset114516 Length0
FFFE,E000,Image Fragment [0@114518]=0 Offset114518 Length0
FFFE,E000,Image Fragment [0@114520]=0 Offset114520 Length0
FFFE,E000,Image Fragment [0@114100]=0 Offset114100 Length0
FFFE,E000,Image Fragment [0@114514]=0 Offset114514 Length0
FFFE,E000,Image Fragment [0@114514]=0 Offset114514 Length0
FFFE,E000,Image Fragment [0@114520]=0 Offset114520 Length0
FFFE,E000,Image Fragment [0@114516]=0 Offset114516 Length0
FFFE,E000,Image Fragment [0@114516]=0 Offset114516 Length0
FFFE,E000,Image Fragment [0@114510]=0 Offset114510 Length0
FFFE,E000,Image Fragment [0@114514]=0 Offset114514 Length0
FFFE,E000,Image Fragment [0@114518]=0 Offset114518 Length0
FFFE,E000,Image Fragment [0@114512]=0 Offset114512 Length0
FFFE,E000,Image Fragment [0@114520]=0 Offset114520 Length0
FFFE,E000,Image Fragment [0@114518]=0 Offset114518 Length0
FFFE,E000,Image Fragment [0@114512]=0 Offset114512 Length0
FFFE,E000,Image Fragment [0@114520]=0 Offset114520 Length0
FFFE,E000,Image Fragment [0@114520]=0 Offset114520 Length0
FFFE,E000,Image Fragment [0@114514]=0 Offset114514 Length0
FFFE,E000,Image Fragment [0@114508]=0 Offset114508 Length0
FFFE,E000,Image Fragment [0@114504]=0 Offset114504 Length0
FFFE,E000,Image Fragment [0@114516]=0 Offset114516 Length0
FFFE,E000,Image Fragment [0@114512]=0 Offset114512 Length0
FFFE,E000,Image Fragment [0@114514]=0 Offset114514 Length0
FFFE,E000,Image Fragment [0@114508]=0 Offset114508 Length0
FFFE,E000,Image Fragment [0@114500]=0 Offset114500 Length0
FFFE,E000,Image Fragment [0@114100]=0 Offset114100 Length0
FFFE,E000,Image Fragment [0@114504]=0 Offset114504 Length0
FFFE,E000,Image Fragment [0@114500]=0 Offset114500 Length0
Unable to find any DICOM files in the path F:\V1\MR_9_1554834.dcm
Conversion completed in 4015 ms
By the way, use the Anonymization first doesn't help either.
But in fact, with the data that actually work out, it should be like this;
Chris Rorden's dcm2nii :: 2MAY2016 64bit BSD License :: (upgrade to dcm2niix suggested)
Converting F:\A7
Data will be exported to F:\A7
Validating 64 potential DICOM images.
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@112676]= Offset112676 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113092]= Offset113092 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113092]= Offset113092 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113092]= Offset113092 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113096]= Offset113096 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113086]= Offset113086 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113086]= Offset113086 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113096]= Offset113096 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113088]= Offset113088 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113092]= Offset113092 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113094]= Offset113094 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113098]= Offset113098 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113102]= Offset113102 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113102]= Offset113102 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113092]= Offset113092 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113098]= Offset113098 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113090]= Offset113090 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113090]= Offset113090 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113102]= Offset113102 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113100]= Offset113100 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113090]= Offset113090 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113092]= Offset113092 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113098]= Offset113098 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113094]= Offset113094 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113094]= Offset113094 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113102]= Offset113102 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113096]= Offset113096 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113100]= Offset113100 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113094]= Offset113094 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113098]= Offset113098 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113088]= Offset113088 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113094]= Offset113094 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113096]= Offset113096 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113096]= Offset113096 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113100]= Offset113100 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113096]= Offset113096 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113090]= Offset113090 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113100]= Offset113100 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113094]= Offset113094 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113096]= Offset113096 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113096]= Offset113096 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113096]= Offset113096 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113100]= Offset113100 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113098]= Offset113098 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113092]= Offset113092 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113096]= Offset113096 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113088]= Offset113088 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113088]= Offset113088 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113098]= Offset113098 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113100]= Offset113100 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113086]= Offset113086 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113092]= Offset113092 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113096]= Offset113096 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113092]= Offset113092 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113096]= Offset113096 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113098]= Offset113098 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113094]= Offset113094 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113100]= Offset113100 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113092]= Offset113092 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113094]= Offset113094 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113090]= Offset113090 Length0
Found 61 DICOM images.
Converting 61/61 volumes: 61
1.3.12.2.1107.5.2.32.35420.2015080617192997084890837.dcm->20150806_165716ep2ddiff12CHSTD302x2x2256FOVb1000dist0APs006a001A.nii
Warning: Unknown Siemens slice order 0
Warning: Siemens interleaved acquisition with an even number of slices. Assume even slices acquired PRIOR to odd slices. https://wiki.cimec.unitn.it/tiki-index.p...
MosaicRefAcqTimes (60 values for Slice Time Correction) 4267.5 0 4410 142.5 4552.5 285 4695 427.5 4837.5 570 4980 712.5 5120 855 5262.5 997.5 5405 1137.5 5547.5 1280 5690 1422.5 5832.5 1565 5975 1707.5 6117.5 1850 6260 1992.5 6400 2135 6542.5 2277.5 6685 2420 6827.5 2560 6970 2702.5 7112.5 2845 7255 2987.5 7397.5 3130 7540 3272.5 7680 3415 7822.5 3557.5 7965 3700 8107.5 3840 8250 3982.5 8392.5 4125
For slice timing correction: the slice order is Siemens-even interleaved ascending (2,4..,1,3...)
Effective echo spacing: 0.3750059903ms, BandwidthPerPixelPhaseEncode: 20.83300018
brightest voxel was 3643: data will be saved as 16-bit signed integer.
GZip...20150806_165716ep2ddiff12CHSTD302x2x2256FOVb1000dist0APs006a001A.nii.gz
Number of diffusion directions = 61
Conversion completed in 19468 ms
So, could anyone please give me some advice about what I should do about it?
Best regards,
XINMAN
I'm new to use dcm2nii, and I have run it with two data files. One work pretty well, but the other did not seem to work out. And I cannot figure out what is wrong with it. Could anyone help?
So, with the data that did not work out, it show as follows,
Chris Rorden's dcm2nii :: 2MAY2016 64bit BSD License :: (upgrade to dcm2niix suggested)
reading preferences file F:\NITRC-mricron-Downloads\mricron\dcm2niigui.ini
Chris Rorden's dcm2nii :: 2MAY2016 64bit BSD License :: (upgrade to dcm2niix suggested)
Converting F:\V1
Data will be exported to F:\V1
Validating 85 potential DICOM images.
FFFE,E000,Image Fragment [0@114500]=0 Offset114500 Length0
FFFE,E000,Image Fragment [0@114518]=0 Offset114518 Length0
FFFE,E000,Image Fragment [0@114502]=0 Offset114502 Length0
FFFE,E000,Image Fragment [0@114508]=0 Offset114508 Length0
FFFE,E000,Image Fragment [0@114514]=0 Offset114514 Length0
FFFE,E000,Image Fragment [0@114518]=0 Offset114518 Length0
FFFE,E000,Image Fragment [0@114520]=0 Offset114520 Length0
FFFE,E000,Image Fragment [0@114510]=0 Offset114510 Length0
FFFE,E000,Image Fragment [0@114516]=0 Offset114516 Length0
FFFE,E000,Image Fragment [0@114510]=0 Offset114510 Length0
FFFE,E000,Image Fragment [0@114090]=0 Offset114090 Length0
FFFE,E000,Image Fragment [0@114520]=0 Offset114520 Length0
FFFE,E000,Image Fragment [0@114518]=0 Offset114518 Length0
FFFE,E000,Image Fragment [0@114096]=0 Offset114096 Length0
FFFE,E000,Image Fragment [0@114510]=0 Offset114510 Length0
FFFE,E000,Image Fragment [0@114516]=0 Offset114516 Length0
FFFE,E000,Image Fragment [0@114518]=0 Offset114518 Length0
FFFE,E000,Image Fragment [0@114512]=0 Offset114512 Length0
FFFE,E000,Image Fragment [0@114510]=0 Offset114510 Length0
FFFE,E000,Image Fragment [0@114516]=0 Offset114516 Length0
FFFE,E000,Image Fragment [0@114518]=0 Offset114518 Length0
FFFE,E000,Image Fragment [0@114486]=0 Offset114486 Length0
FFFE,E000,Image Fragment [0@114516]=0 Offset114516 Length0
FFFE,E000,Image Fragment [0@114514]=0 Offset114514 Length0
FFFE,E000,Image Fragment [0@114508]=0 Offset114508 Length0
FFFE,E000,Image Fragment [0@114506]=0 Offset114506 Length0
FFFE,E000,Image Fragment [0@114516]=0 Offset114516 Length0
FFFE,E000,Image Fragment [0@114518]=0 Offset114518 Length0
FFFE,E000,Image Fragment [0@114516]=0 Offset114516 Length0
FFFE,E000,Image Fragment [0@114506]=0 Offset114506 Length0
FFFE,E000,Image Fragment [0@114516]=0 Offset114516 Length0
FFFE,E000,Image Fragment [0@114510]=0 Offset114510 Length0
FFFE,E000,Image Fragment [0@114502]=0 Offset114502 Length0
FFFE,E000,Image Fragment [0@114512]=0 Offset114512 Length0
FFFE,E000,Image Fragment [0@114506]=0 Offset114506 Length0
FFFE,E000,Image Fragment [0@114496]=0 Offset114496 Length0
FFFE,E000,Image Fragment [0@114098]=0 Offset114098 Length0
FFFE,E000,Image Fragment [0@114498]=0 Offset114498 Length0
FFFE,E000,Image Fragment [0@114506]=0 Offset114506 Length0
FFFE,E000,Image Fragment [0@114516]=0 Offset114516 Length0
FFFE,E000,Image Fragment [0@114508]=0 Offset114508 Length0
FFFE,E000,Image Fragment [0@114518]=0 Offset114518 Length0
FFFE,E000,Image Fragment [0@114518]=0 Offset114518 Length0
FFFE,E000,Image Fragment [0@114506]=0 Offset114506 Length0
FFFE,E000,Image Fragment [0@114518]=0 Offset114518 Length0
FFFE,E000,Image Fragment [0@114514]=0 Offset114514 Length0
FFFE,E000,Image Fragment [0@114502]=0 Offset114502 Length0
FFFE,E000,Image Fragment [0@114518]=0 Offset114518 Length0
FFFE,E000,Image Fragment [0@114514]=0 Offset114514 Length0
FFFE,E000,Image Fragment [0@114516]=0 Offset114516 Length0
FFFE,E000,Image Fragment [0@114520]=0 Offset114520 Length0
FFFE,E000,Image Fragment [0@114520]=0 Offset114520 Length0
FFFE,E000,Image Fragment [0@114518]=0 Offset114518 Length0
FFFE,E000,Image Fragment [0@114514]=0 Offset114514 Length0
FFFE,E000,Image Fragment [0@114502]=0 Offset114502 Length0
FFFE,E000,Image Fragment [0@114520]=0 Offset114520 Length0
FFFE,E000,Image Fragment [0@114516]=0 Offset114516 Length0
FFFE,E000,Image Fragment [0@114518]=0 Offset114518 Length0
FFFE,E000,Image Fragment [0@114520]=0 Offset114520 Length0
FFFE,E000,Image Fragment [0@114100]=0 Offset114100 Length0
FFFE,E000,Image Fragment [0@114514]=0 Offset114514 Length0
FFFE,E000,Image Fragment [0@114514]=0 Offset114514 Length0
FFFE,E000,Image Fragment [0@114520]=0 Offset114520 Length0
FFFE,E000,Image Fragment [0@114516]=0 Offset114516 Length0
FFFE,E000,Image Fragment [0@114516]=0 Offset114516 Length0
FFFE,E000,Image Fragment [0@114510]=0 Offset114510 Length0
FFFE,E000,Image Fragment [0@114514]=0 Offset114514 Length0
FFFE,E000,Image Fragment [0@114518]=0 Offset114518 Length0
FFFE,E000,Image Fragment [0@114512]=0 Offset114512 Length0
FFFE,E000,Image Fragment [0@114520]=0 Offset114520 Length0
FFFE,E000,Image Fragment [0@114518]=0 Offset114518 Length0
FFFE,E000,Image Fragment [0@114512]=0 Offset114512 Length0
FFFE,E000,Image Fragment [0@114520]=0 Offset114520 Length0
FFFE,E000,Image Fragment [0@114520]=0 Offset114520 Length0
FFFE,E000,Image Fragment [0@114514]=0 Offset114514 Length0
FFFE,E000,Image Fragment [0@114508]=0 Offset114508 Length0
FFFE,E000,Image Fragment [0@114504]=0 Offset114504 Length0
FFFE,E000,Image Fragment [0@114516]=0 Offset114516 Length0
FFFE,E000,Image Fragment [0@114512]=0 Offset114512 Length0
FFFE,E000,Image Fragment [0@114514]=0 Offset114514 Length0
FFFE,E000,Image Fragment [0@114508]=0 Offset114508 Length0
FFFE,E000,Image Fragment [0@114500]=0 Offset114500 Length0
FFFE,E000,Image Fragment [0@114100]=0 Offset114100 Length0
FFFE,E000,Image Fragment [0@114504]=0 Offset114504 Length0
FFFE,E000,Image Fragment [0@114500]=0 Offset114500 Length0
Unable to find any DICOM files in the path F:\V1\MR_9_1554834.dcm
Conversion completed in 4015 ms
By the way, use the Anonymization first doesn't help either.
But in fact, with the data that actually work out, it should be like this;
Chris Rorden's dcm2nii :: 2MAY2016 64bit BSD License :: (upgrade to dcm2niix suggested)
Converting F:\A7
Data will be exported to F:\A7
Validating 64 potential DICOM images.
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@112676]= Offset112676 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113092]= Offset113092 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113092]= Offset113092 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113092]= Offset113092 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113096]= Offset113096 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113086]= Offset113086 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
FFFE,E000,Image Fragment [0@113086]= Offset113086 Length0
FFFE,E000,Image Fragment [0@1022]= Offset1022 Length0
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Found 61 DICOM images.
Converting 61/61 volumes: 61
1.3.12.2.1107.5.2.32.35420.2015080617192997084890837.dcm->20150806_165716ep2ddiff12CHSTD302x2x2256FOVb1000dist0APs006a001A.nii
Warning: Unknown Siemens slice order 0
Warning: Siemens interleaved acquisition with an even number of slices. Assume even slices acquired PRIOR to odd slices. https://wiki.cimec.unitn.it/tiki-index.p...
MosaicRefAcqTimes (60 values for Slice Time Correction) 4267.5 0 4410 142.5 4552.5 285 4695 427.5 4837.5 570 4980 712.5 5120 855 5262.5 997.5 5405 1137.5 5547.5 1280 5690 1422.5 5832.5 1565 5975 1707.5 6117.5 1850 6260 1992.5 6400 2135 6542.5 2277.5 6685 2420 6827.5 2560 6970 2702.5 7112.5 2845 7255 2987.5 7397.5 3130 7540 3272.5 7680 3415 7822.5 3557.5 7965 3700 8107.5 3840 8250 3982.5 8392.5 4125
For slice timing correction: the slice order is Siemens-even interleaved ascending (2,4..,1,3...)
Effective echo spacing: 0.3750059903ms, BandwidthPerPixelPhaseEncode: 20.83300018
brightest voxel was 3643: data will be saved as 16-bit signed integer.
GZip...20150806_165716ep2ddiff12CHSTD302x2x2256FOVb1000dist0APs006a001A.nii.gz
Number of diffusion directions = 61
Conversion completed in 19468 ms
So, could anyone please give me some advice about what I should do about it?
Best regards,
XINMAN
Threaded View
Title | Author | Date |
---|---|---|
Xinman Liu | Apr 17, 2018 | |
Chris Rorden | Apr 17, 2018 | |
Ariadna ALBAJARA SAENZ | Apr 23, 2018 | |
Chris Rorden | Apr 23, 2018 | |
Ariadna ALBAJARA SAENZ | Apr 27, 2018 | |