open-discussion
open-discussion > RE: Generating image for publication [Bioimage suite related]
May 30, 2018 12:05 PM | Larry Olson - Emory University
RE: Generating image for publication [Bioimage suite related]
It depends on the type of image you wish to show:
-MRIcron is actually excellent for extracting the VOI and displaying 2D images in a single plane or as orthogonal triplane images. I have found these steps helpful:
-The "nicest" 3D representation can be done with MeVisLab's View3D.
-MRIcron is actually excellent for extracting the VOI and displaying 2D images in a single plane or as orthogonal triplane images. I have found these steps helpful:
- First, create an intensity filter of the perfusion image from the Draw menu. This will allow you to "extract" the volume of the hyper (or hypo) perfusion clusters.
- Then mask the clusters in the perfusion image using the Draw menu. Open the image of the clusters, then open the intensity filter voi as a VOI in the Draw menu, then apply the mask and save the result.
- Finally open the masked perfusion cluster as an overlay on your T1. I favor the actc LUT/color map to show these results
-The "nicest" 3D representation can be done with MeVisLab's View3D.
- Put the stripped T1 in as the main image,
- then add the perfusion cluster you created with the MRIcron method as an isocontour overlay. I attached a typical MeVisLab network to show the setup.
- You can clip the T1 in any plane to expose the deeper portions of the cluster or modify the transparency to do that.
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Title | Author | Date |
---|---|---|
Luis Araujo | May 30, 2018 | |
Larry Olson | May 30, 2018 | |
Luis Araujo | Jul 11, 2018 | |
Larry Olson | Jul 11, 2018 | |