open-discussion > RE: SPECT
Mar 20, 2019  12:03 PM | Xenophon Papademetris
RE: SPECT
Larry,

Updated.


1. We can output native space now. Try https://bioimagesuiteweb.github.io/unsta...

After you Computed Diff Spect Maps, then click "Map TMAP to Native Space"
To see the images later go to Show diff SPECT Data Tree. Open the folder diff spect and and right click on either tmap or tmap native


1. There are updated command line tools (alpha!)

Download here: http://bisweb.yale.edu/binaries2/biswebn...
Use npm install to install these (as any node package, e.g. sudo npm install -g biswebnode-1.1.0-a9.tgz)

To run the diffspect

biswebnode diffspect -h

To save the tmap in native space you must specify both

--native true
--output2 somefilename.nii.gz

Here is an example:

biswebnode diffSpect -i Patient2ICTAL.nii.gz -r Patient2INTERICTAL.nii.gz --native true --nonlinear false --output ~/Desktop/diff.nii.gz --output2 ~/Desktop/diffnat.nii.gz

Xenios

Threaded View

TitleAuthorDate
Larry Olson Jan 26, 2019
Xenophon Papademetris Jan 28, 2019
Larry Olson Jan 29, 2019
Xenophon Papademetris Jan 29, 2019
Larry Olson Feb 15, 2019
RE: SPECT
Xenophon Papademetris Mar 20, 2019
Larry Olson Apr 2, 2019
Xenophon Papademetris Apr 5, 2019
Larry Olson Apr 21, 2019
Larry Olson Apr 5, 2019
Xenophon Papademetris Apr 5, 2019
Larry Olson Apr 17, 2019
Xenophon Papademetris Feb 18, 2019