open-discussion
open-discussion > RE: use the package of MRIcroGL in common python coding and problem about remove haze in scripting
Jun 26, 2020 03:06 PM | Chris Rorden
RE: use the package of MRIcroGL in common python coding and problem about remove haze in scripting
I am assuming you are using the latest version (1.2.20200331). The extract function will remove haze. A minimal script might look like
this:
The help for this function describes the arguments:
You can see all the in-built functions and their usage by running the Scripting/Templates/Help menu item. The other scripts in the Scripting/Templates menu describe the functions in more detail. The NITRC wiki also provides a brief introduction to scripting. Feel free to contribute to the Wiki if you want to improve it for others.
import gl
gl.loadimage('myBrain.nii')
gl.extract(1,1,3)
gl.loadimage('myBrain.nii')
gl.extract(1,1,3)
The help for this function describes the arguments:
extract (built-in function):
extract(|b,s,t) -> Remove haze from background image. Blur edges (b: 0=no, 1=yes, default), single object (s: 0=no, 1=yes, default), threshold (t: 1..5=high threshold, 5 is default, higher values yield larger objects)
extract(|b,s,t) -> Remove haze from background image. Blur edges (b: 0=no, 1=yes, default), single object (s: 0=no, 1=yes, default), threshold (t: 1..5=high threshold, 5 is default, higher values yield larger objects)
You can see all the in-built functions and their usage by running the Scripting/Templates/Help menu item. The other scripts in the Scripting/Templates menu describe the functions in more detail. The NITRC wiki also provides a brief introduction to scripting. Feel free to contribute to the Wiki if you want to improve it for others.
Threaded View
| Title | Author | Date |
|---|---|---|
| Lance Liu | Jun 26, 2020 | |
| Chris Rorden | Jun 26, 2020 | |
| Lance Liu | Jun 28, 2020 | |
| Chris Rorden | Jun 28, 2020 | |
| Lance Liu | Aug 2, 2020 | |
| Chris Rorden | Aug 2, 2020 | |
| Lance Liu | Aug 3, 2020 | |
| Chris Rorden | Aug 3, 2020 | |
| Chris Rorden | Jun 28, 2020 | |