Hello
  I have been using the MOST tracing plugin to trace vascular networks in my datasets. I want to optimise the parameters for it in the same way as they did in the original paper, but to do that I think I need the output of the segmentation (the vessel scooping) before the skeletonisation (radius-adjustable sphere algorithm). Or I need to create a binary image based on a slice through the swc recorded nodes and radii. I was wondering if anyone knew how I could get the plugin to output a version of the images after the vessel scooping, or if anyone knew of code to do the swc to binary label (with radius info)?


Many Thanks
Claire