Dear experts,

I am a new user of DTIPrep and I am having some problems when I set the BRAINMASK_bCheck option to Yes in the protocol.

In the QC Report it is written: 

Brain Mask FSL
/home/rita/Desktop/DTIPrep-1.2.11/bin/ImageMath crashes.

I checked all the paths and if the files are executable. Everything looks fine to me.

Also, I am having some errors during dtiprocess and dtiestim (picture attached). Only _Baseline, _DTI and _IDWI files are created.


Thanks in advance!
Rita