open-discussion
open-discussion > RE: ImageMath crashes
Mar 17, 2021 02:03 PM | Martin Styner
RE: ImageMath crashes
ImageMath: This might be an issue due
to ANTS having also a tool/executable called ImageMath (and of
course, the two tools are not compatible, even though they do
similar tasks). If you have the ANTS ImageMath in your PATH, then
that could be the source of your issue. Solution would be to either
remove ANTS from your PATH when running DTIPrep or ensure that the
DTIPrep path is mentioned before the ANTS path.
dtiestim seems to have worked, though not dtiprocess. Best turn off writing the frobenius norm image in the DTIPrep protocol (probably a version issue on dtiprocess).
Martin
Originally posted by ritagv:
dtiestim seems to have worked, though not dtiprocess. Best turn off writing the frobenius norm image in the DTIPrep protocol (probably a version issue on dtiprocess).
Martin
Originally posted by ritagv:
Dear experts,
I am a new user of DTIPrep and I am having some problems when I set the BRAINMASK_bCheck option to Yes in the protocol.
In the QC Report it is written:
Brain Mask FSL
/home/rita/Desktop/DTIPrep-1.2.11/bin/ImageMath crashes.
I checked all the paths and if the files are executable. Everything looks fine to me.
Also, I am having some errors during dtiprocess and dtiestim (picture attached). Only _Baseline, _DTI and _IDWI files are created.
Thanks in advance!
Rita
I am a new user of DTIPrep and I am having some problems when I set the BRAINMASK_bCheck option to Yes in the protocol.
In the QC Report it is written:
Brain Mask FSL
/home/rita/Desktop/DTIPrep-1.2.11/bin/ImageMath crashes.
I checked all the paths and if the files are executable. Everything looks fine to me.
Also, I am having some errors during dtiprocess and dtiestim (picture attached). Only _Baseline, _DTI and _IDWI files are created.
Thanks in advance!
Rita
Threaded View
| Title | Author | Date |
|---|---|---|
| ritagv | Mar 17, 2021 | |
| Martin Styner | Mar 17, 2021 | |