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general > RE: QUINT Workflow Report Not Counting some Pixels
Oct 1, 2021 10:10 AM | Sharon Christine Yates - University of Oslo
RE: QUINT Workflow Report Not Counting some Pixels
Hi Diana,
Please send this request to EBRAINS support at support@ebrains.eu and we'll do our best to help. To investigate we'll need a copy of your .nut file, a segmentation, an atlas map and the xml of json file. One segmentation file with the corresponding atlas map should do (include the section where the problem occurs).
I assume you haven't set a minimum object size (under the advanced settings) as this could explain the exclusion of small objects.
Best wishes,
Sharon
Sharon Yates
Originally posted by dlee92:
Please send this request to EBRAINS support at support@ebrains.eu and we'll do our best to help. To investigate we'll need a copy of your .nut file, a segmentation, an atlas map and the xml of json file. One segmentation file with the corresponding atlas map should do (include the section where the problem occurs).
I assume you haven't set a minimum object size (under the advanced settings) as this could explain the exclusion of small objects.
Best wishes,
Sharon
Sharon Yates
Originally posted by dlee92:
Hello there,
I have been using the QUINT workflow to count active neurons and have noted that when a single neuron (approximately 1-3 pixels) in a region, that the Nutil Quant report output will report 0 pixels.
Could someone point me in the right direction and/or explain what is going on here?\
Best,
Diana
I have been using the QUINT workflow to count active neurons and have noted that when a single neuron (approximately 1-3 pixels) in a region, that the Nutil Quant report output will report 0 pixels.
Could someone point me in the right direction and/or explain what is going on here?\
Best,
Diana
Threaded View
| Title | Author | Date |
|---|---|---|
| dlee92 | Sep 30, 2021 | |
| Sharon Christine Yates | Oct 1, 2021 | |
| busra | Dec 28, 2023 | |
| Sharon Christine Yates | Jan 15, 2024 | |