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help > Error running mri_reface
Jan 6, 2023 09:01 PM | David G Ellis - University of Nebraska Medical Center
Error running mri_reface
When I try to run mri_reface, I get the following error:
$ ./mri_reface ~/Downloads/CT.nii ~/Downloads/ -imType CT
-------------------------------------------------------
Running mri_reface, version 0.3
By: Christopher G. Schwarz schwarz.christopher@mayo.edu
Temp directory: /tmp/tp2b0a7f62_e01f_4f69_a895_b6b21c0d1523
Target file: /home/david/Downloads/CT.nii
Output directory: /home/david/Downloads/
Target image type: CT
Template: /home/david/.mcrCache9.4/mri_re0/images/MCALT_FaceTemplate_CT-PIB.nii
Face atlas: /home/david/.mcrCache9.4/mri_re0/images/MCALT_FaceMask.nii
I am using:
NiftyReg Version: 1.3.9
ANTs Version: v2.4.2-g6c72971
It seems that reg_aladin isn't expecting the "-omp" flag. Is there a different version of NiftyReg that I should be using?
Thanks,
David
$ ./mri_reface ~/Downloads/CT.nii ~/Downloads/ -imType CT
-------------------------------------------------------
Running mri_reface, version 0.3
By: Christopher G. Schwarz schwarz.christopher@mayo.edu
Temp directory: /tmp/tp2b0a7f62_e01f_4f69_a895_b6b21c0d1523
Target file: /home/david/Downloads/CT.nii
Output directory: /home/david/Downloads/
Target image type: CT
Template: /home/david/.mcrCache9.4/mri_re0/images/MCALT_FaceTemplate_CT-PIB.nii
Face atlas: /home/david/.mcrCache9.4/mri_re0/images/MCALT_FaceMask.nii
Calculating affine parameters to template.
This will take some time.
Error using ADIR_coreg_to_T1 (line 313)
/home/david/Apps/NiftyReg/bin/reg_aladin -source moving_CT_forCoreg.nii -target fixed_MCALT_FaceTemplate_CT-PIB.nii -aff CT_forCoreg_to_MCALT_FaceTemplate_CT-PIB_AladinAffine.txt -tmask fixed_MCALT_FaceTemplate_CT-PIB_masked_dilatedMask.nii -omp 1failed with output: Err: Parameter -omp unknown.
Error using ADIR_coreg_to_T1 (line 313)
/home/david/Apps/NiftyReg/bin/reg_aladin -source moving_CT_forCoreg.nii -target fixed_MCALT_FaceTemplate_CT-PIB.nii -aff CT_forCoreg_to_MCALT_FaceTemplate_CT-PIB_AladinAffine.txt -tmask fixed_MCALT_FaceTemplate_CT-PIB_masked_dilatedMask.nii -omp 1failed with output: Err: Parameter -omp unknown.
reg_aladin
Usage: /home/david/Apps/NiftyReg/bin/reg_aladin -ref -flo [OPTIONS].
See the help for more details (-h).
Usage: /home/david/Apps/NiftyReg/bin/reg_aladin -ref -flo [OPTIONS].
See the help for more details (-h).
Error in ADIR_ReFace (line 443)
I am using:
NiftyReg Version: 1.3.9
ANTs Version: v2.4.2-g6c72971
It seems that reg_aladin isn't expecting the "-omp" flag. Is there a different version of NiftyReg that I should be using?
Thanks,
David
Threaded View
| Title | Author | Date |
|---|---|---|
| David G Ellis | Jan 6, 2023 | |
| David G Ellis | Jan 18, 2023 | |
| Christopher Schwarz | Jan 18, 2023 | |
| Christopher Schwarz | Jan 7, 2023 | |
| David G Ellis | Jan 17, 2023 | |
| Christopher Schwarz | Jan 18, 2023 | |
| NITRC Moderator | Jan 18, 2023 | |
| Christopher Schwarz | Jan 18, 2023 | |
| Christopher Schwarz | Apr 26, 2023 | |
| David G Ellis | Apr 26, 2023 | |
