David,

You may be interested in our new 0.3.2 release, which now has an officially supported Docker image. It took a while, but we found a way around the remder/openGL errors inside Docker. We had to create the Docker image using Matlab's own tools during the initial compile of mri_reface, and then amend that Matlab-created Dockerfile with our additional dependencies. Matlab seems to do something special with the Matlab runtime in the Docker images that it creates. 

Chris