I open the registered image using test1 and test2, but the menu of 3D image atlas is not active.

Then i try this,but it doesnot work

command:

./brainaligner_linux_redhat_fedora_64bit -t test1_256.tif -s
test2_256.tif  -L test1_256.marker, -C 1, -c 2, -w 10, -H 2, -j 1, -i 2,
-B 1024,  -o t21_256.tif



Then i get:



The current input file has the surfix [tif]

#original slice=108 original rez=1.00000 -> #output slices=108 new rez=1.00000

The current input file has the surfix [tif]

#original slice=108 original rez=1.00000 -> #output slices=108 new rez=1.00000

After preprocessing:

 Size of subject_image = [256 256 108 1], size of target_image = [256 256 108 1].

The reference channelNo of either subject image or target image is (or
both are) invalid (bigger than the number of channels the images have).
Exit.