Notes:

Release Name: MITK Diffusion 2013.03-deleted-1575359371

Notes:

User manual

The user manual for the MITK Diffusion 2013.13 application can be found here.

 

 

Downloads

Version 2013.03 ( Release date: 04-04-2013 )

 

Requirements

Additional system specific requirements:

  • Windows

    • If you have problems running the Windows application, please install the Microsoft Redistributable Packages for VS 2008: [url=http://www.microsoft.com/download/en/details.aspx?amp;displaylang=en&id=5582]32 bit[/url] or [url=http://www.microsoft.com/download/en/details.aspx?amp;displaylang=en&id=2092]64 bit[/url]

  • Linux

Tested systems

  • Windows 7, Windows Vista
  • Ubuntu 12.04 and newer
  • OS X 10.6 (Snow Leopard), OS X 10.8 (Mountain Lion)

Testing data


A set of data for testing the functionality of the mitkDiffusion application is available here.

 

Contact


If you have questions about the application or if you would like to give us feedback, don't hesitate to contact us.

Changes:

  • Based on the MITK 2013.03 Release

  • New features in FiberFox

    • Fiber Definition
      • Added functions to copy, translate, rotate and scale fibers including the corresponding fiducials
      • Fiducial alignment with voxel grid
      • Fiber definition with only two ROIs
    • Signal Generation
      • Extended diffusion models: Stick, Zeppelin, Tensor, Ball, Astrosticks, Dot
      • Extended two-compartment model to four-compartment model
      • Realistic simulation of relaxation effects. Parameters: T2 (per compartment), TE, T2' and line readout time
      • Explicit definition of fiber radius used for the calculation of compartment volume fractions
      • Changed the relative parameter SNR to the absolute parameter noise variance

      • Removed internal signal normalization --> double voxel size in one dimension results in twice the signal strength

    • Complete refactoring of the Fiberfox help page

  • Fiber Processing View reodered and splitted into separate views: Fiber Processing and Fiber Extraction

  • Modularization of the Diffusion Module into

    • new submodules DiffusionCore, FiberTracking, Connectomics, Quantification

  • New, user defined visualisation properties for connectomics networks added
  • Several bugs fixed in both registration views