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Notes:
The most up to date version of NeuroDOT can be found on our
GitHub https://github.com/WUSTL-ORL/NeuroDOT (also listed under
‘Downloads: NeuroDOT NITRC Release’). NeuroDOT –Matlab is currently
optimized to run on version 2020b of Matlab. Additional
specifications for optimal performance are in the README.
Changes:
Changes since NeuroDOT v1.1:
1. Compatibility with SNIRF format:
- Updated info.paradigm.synchpt creation in snirf2ndot
- Added ndot2snirf to convert from NeuroDOT format to SNIRF
format
- Verified compatibility with LUMO
2. Added NIRS format compatibility:
- nirs2ndot to convert data from .nirs files to be used in
NeuroDOT
- ndot2nirs to convert NeuroDOT data to .nirs format
3. Added NIFTI format compatibility:
- Added nifti_4dfp to convert between .nii and .4dfp format
- Updated LoadVolumetricData and SaveVolumetricData to be
compatible with .nii files
- Fixed compatibility with ‘nii.gz’ extension
4. Added new functions:
- Visualizations: AdjustFoci, Draw_ROIs_on_Cortex,
Nuisance_Regress, PlotCapMeasSpaceData_Pairs, Two_D_Image_hist,
GrayPlot_TimeTrace_Rsd_by_WL
- Light Modeling: OptProp, PSF_Metrics_200630, threshold5R_new,
calc_NN, Generate_pad_from_grid
- Spatial Transforms: resample_A_to_atlas
- Reconstruction: MBLL
5. Updated NeuroDOT Tutorial PowerPoints and Scripts:
- AlignMe tutorials
- Script for Generating a Pad File
- Full Data Processing Overview
- Visualization Overview
6. Updates to AlignMe:
- Updated method for scaling from atlas to participant
measurements
- Updated transform to match pre-multiply convention
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